update examples/COUPLE/simple sources to work with the current version of LAMMPS

This commit is contained in:
Axel Kohlmeyer
2020-09-24 01:30:34 -04:00
parent b350dce573
commit ac78f8f1e1
5 changed files with 40 additions and 40 deletions

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@ -2,3 +2,7 @@
*.d
*.a
*~
liblammps.mod
simpleC
simpleCC
simpleF

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@ -8,10 +8,9 @@ code to perform a coupled calculation.
simple.cpp is the C++ driver
simple.c is the C driver
simple.f90 is the Fortran driver
libfwrapper.c is the Fortran-to-C wrapper
The 3 codes do the same thing, so you can compare them to see how to
drive LAMMPS from each language. See lammps/python/example/simple.py
drive LAMMPS from each language. See python/example/simple.py
to do something similar from Python. The Fortran driver requires an
additional wrapper library that interfaces the C interface of the
LAMMPS library to Fortran and also translates the MPI communicator
@ -26,27 +25,23 @@ these, which include paths to the LAMMPS library interface, and
linking with FFTW (only needed if you built LAMMPS as a library with
its PPPM solver).
This builds the C++ driver with the LAMMPS library using the mpiCC
This builds the C++ driver with the LAMMPS library using the mpicxx
(C++) compiler:
mpiCC -I/home/sjplimp/lammps/src -c simple.cpp
mpiCC -L/home/sjplimp/lammps/src simple.o -llammps -lfftw -o simpleCC
mpicxx -I/home/sjplimp/lammps/src -c simple.cpp
mpicxx -L/home/sjplimp/lammps/src simple.o -llammps -o simpleCC
This builds the C driver with the LAMMPS library using the mpicc (C)
compiler:
mpicc -I/home/sjplimp/lammps/src -c simple.c
mpicc -L/home/sjplimp/lammps/src simple.o -llammps -lfftw -o simpleC
mpicc -L/home/sjplimp/lammps/src simple.o -llammps -o simpleC
This builds the Fortran wrapper and driver with the LAMMPS library
using the mpicc (C) and mpifort (Fortran) compilers, using the wrapper
in the fortran directory:
This builds the Fortran module and driver with the LAMMPS library
using the mpifort (Fortran) compilers, using the Fortran module from
the fortran directory:
cp ../fortran/libfwrapper.c .
mpicc -I/home/sjplimp/lammps/src -c libfwrapper.c
mpifort -c simple.f90
mpifort -L/home/sjplimp/lammps/src simple.o libfwrapper.o \
-llammps -lfftw -o simpleF
mpifort -L/home/sjplimp/lammps/src ../../../fortran/lammps.f90 simple.f90 -llammps -o simpleF
You then run simpleCC, simpleC, or simpleF on a parallel machine
on some number of processors Q with 2 arguments:

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@ -23,7 +23,7 @@
#include <stdlib.h>
#include <string.h>
#include <mpi.h>
#include "lammps/library.h" /* this is a LAMMPS include file */
#include "library.h" /* this is a LAMMPS include file */
int main(int narg, char **arg)
{
@ -124,10 +124,10 @@ int main(int narg, char **arg)
/* use commands_string() and commands_list() to invoke more commands */
char *strtwo = "run 10\nrun 20";
const char *strtwo = "run 10\nrun 20";
if (lammps == 1) lammps_commands_string(lmp,strtwo);
char *cmds[2];
const char *cmds[2];
cmds[0] = "run 10";
cmds[1] = "run 20";
if (lammps == 1) lammps_commands_list(lmp,2,cmds);

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@ -25,10 +25,10 @@
#include <mpi.h>
// these are LAMMPS include files
#include <lammps/lammps.h>
#include <lammps/input.h>
#include <lammps/atom.h>
#include <lammps/library.h>
#include "lammps.h"
#include "input.h"
#include "atom.h"
#include "library.h"
using namespace LAMMPS_NS;
@ -135,10 +135,10 @@ int main(int narg, char **arg)
// use commands_string() and commands_list() to invoke more commands
char *strtwo = (char *) "run 10\nrun 20";
const char *strtwo = (char *) "run 10\nrun 20";
if (lammps == 1) lammps_commands_string(lmp,strtwo);
char *cmds[2];
const char *cmds[2];
cmds[0] = (char *) "run 10";
cmds[1] = (char *) "run 20";
if (lammps == 1) lammps_commands_list(lmp,2,cmds);

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@ -18,13 +18,14 @@
! See README for compilation instructions
PROGRAM f_driver
USE mpi
USE liblammps
IMPLICIT NONE
INCLUDE 'mpif.h'
INTEGER, PARAMETER :: fp=20
INTEGER :: n, narg, ierr, me, nprocs, natoms
INTEGER :: lammps, nprocs_lammps, comm_lammps
INTEGER (kind=8) :: ptr
INTEGER :: color, nprocs_lammps, comm_lammps
TYPE(LAMMPS) :: lmp
REAL (kind=8), ALLOCATABLE :: x(:)
REAL (kind=8), PARAMETER :: epsilon=0.1
@ -58,14 +59,14 @@ PROGRAM f_driver
END IF
END IF
lammps = 0
color = 0
IF (me < nprocs_lammps) THEN
lammps = 1
color = 1
ELSE
lammps = MPI_UNDEFINED
color = MPI_UNDEFINED
END IF
CALL mpi_comm_split(MPI_COMM_WORLD,lammps,0,comm_lammps,ierr)
CALL mpi_comm_split(MPI_COMM_WORLD,color,0,comm_lammps,ierr)
! open LAMMPS input script on rank zero
@ -81,7 +82,7 @@ PROGRAM f_driver
! (could just send it to proc 0 of comm_lammps and let it Bcast)
! all LAMMPS procs call lammps_command() on the line */
IF (lammps == 1) CALL lammps_open(comm_lammps,ptr)
IF (color == 1) lmp=lammps(comm=comm_lammps)
n = 0
DO
@ -99,7 +100,7 @@ PROGRAM f_driver
CALL mpi_bcast(n,1,MPI_INTEGER,0,MPI_COMM_WORLD,ierr)
IF (n == 0) EXIT
CALL mpi_bcast(line,n,MPI_CHARACTER,0,MPI_COMM_WORLD,ierr)
IF (lammps == 1) CALL lammps_command(ptr,line,n)
IF (color == 1) CALL lmp%command(line(1:n))
END DO
CLOSE(UNIT=fp)
@ -109,27 +110,27 @@ PROGRAM f_driver
! put coords back into LAMMPS
! run a single step with changed coords */
IF (lammps == 1) THEN
CALL lammps_command(ptr,'run 10',6)
IF (color == 1) THEN
CALL lmp%command('run 10')
CALL lammps_get_natoms(ptr,natoms)
natoms = NINT(lmp%get_natoms())
ALLOCATE(x(3*natoms))
! these calls are commented out, b/c libfwrapper.c
! needs to be updated to use gather_atoms and scatter_atoms
!CALL lammps_gather_atoms(ptr,'x',1,3,x);
!CALL lammps_gather_atoms(ptr,'x',1,3,x)
!x(1) = x(1) + epsilon
!CALL lammps_scatter_atoms(ptr,'x',1,3,x);
!CALL lammps_scatter_atoms(ptr,'x',1,3,x)
DEALLOCATE(x)
CALL lammps_command(ptr,'run 1',5);
CALL lmp%command('run 1')
END IF
! free LAMMPS object
IF (lammps == 1) CALL lammps_close(ptr);
IF (color == 1) CALL lmp%close()
! close down MPI