Merge remote-tracking branch 'github/master' into coul_tt

doc/utils/sphinx-config/_static/css/lammps.css

@@ -18,3 +18,41 @@
 .versionmodified {
     font-weight: bold;
 }
+
+hr {
+     margin: 12px 0;
+}
+
+.rst-content {
+     margin-bottom: 12px !important;
+}
+
+#user-documentation.section h2 {
+     display: none;
+}
+
+#programmer-documentation.section h2 {
+     display: none;
+}
+
+.ui.tabular.menu .item {
+    padding-right: 1em;
+    padding-left: 1em;
+    padding-top: 0.1em;
+    padding-bottom: 0.1em;
+    border-radius: 6px;
+}
+
+.btn {
+    padding: 4px;
+    font-size: 80%;
+    border-radius: 4px;
+}
+
+.rst-breadcrumbs-buttons {
+    margin: 0;
+}
+
+p {
+   margin-bottom: 12px;
+}

doc/utils/sphinx-config/_themes/lammps_theme/static/css/lammps.css

@@ -1,9 +0,0 @@
-.lammps_version {
-    text-align: center;
-    display: block;
-    margin-bottom: 0.809em;
-}
-
-.versionmodified {
-    font-weight: bold;
-}

doc/utils/sphinx-config/_themes/lammps_theme/theme.conf

@@ -13,6 +13,6 @@ includehidden = True
 titles_only =
 logo_only =
 display_version = True
-prev_next_buttons_location = bottom
-style_external_links = False
+prev_next_buttons_location = both
+style_external_links = True
 style_nav_header_background =

doc/utils/sphinx-config/false_positives.txt

@@ -110,7 +110,9 @@ api
 Apoorva
 Appl
 Apu
+arallel
 arccos
+arge
 Archlinux
 arcsin
 arg
@@ -128,6 +130,7 @@ aspherical
 asphericity
 Asq
 assignee
+assively
 Asta
 Astart
 Astop
@@ -325,6 +328,7 @@ Buyl
 Bybee
 bz
 cadetblue
+calc
 calibre
 caltech
 Caltech
@@ -397,6 +401,7 @@ ChiralIDs
 chiralIDs
 chirality
 Cho
+ChooseOffset
 chris
 Christoph
 Chu
@@ -469,6 +474,7 @@ config
 configfile
 configurational
 conformational
+ConstMatrix
 Contrib
 cooperativity
 coord
@@ -639,7 +645,10 @@ dhex
 dia
 diag
 diagonalization
+diagonalize
 diagonalized
+diagonalizers
+diagonalizing
 Diallo
 diel
 differentiable
@@ -778,8 +787,15 @@ Eggebrecht
 ehex
 eHEX
 Ei
-Eigen
-Eigensolve
+eigen
+eigensolve
+eigensolver
+eigensolvers
+eigendecomposition
+eigenvalue
+eigenvalues
+eigenvector
+eigenvectors
 eij
 Eij
 Eijnden
@@ -893,6 +909,11 @@ eV
 evalue
 Evanseck
 evdwl
+evector
+evec
+evecs
+eval
+evals
 Everaers
 Evgeny
 evirials
@@ -1069,6 +1090,7 @@ Germann
 Germano
 gerolf
 Gerolf
+Gershgorin
 gettimeofday
 gewald
 Gezelter
@@ -1184,6 +1206,7 @@ Henkelman
 Henkes
 henrich
 Henrich
+Hermitian
 Herrmann
 Hertizian
 hertzian
@@ -1257,6 +1280,7 @@ icosahedral
 idealgas
 IDR
 idx
+ie
 ielement
 ieni
 ifdefs
@@ -1279,8 +1303,10 @@ Imageint
 Imagemagick
 imd
 Impey
+impl
 impropers
 Impropers
+imulator
 includelink
 incompressible
 incrementing
@@ -1348,6 +1374,8 @@ isothermal
 isotropically
 isovolume
 Isralewitz
+iter
+iters
 iteratively
 Ith
 Itsets
@@ -1525,6 +1553,7 @@ Kub
 Kubo
 Kumagai
 Kumar
+Kurebayashi
 Kuronen
 Kusters
 Kutta
@@ -1535,12 +1564,14 @@ Ladd
 lagrangian
 lambdai
 lamda
+LambdaLanczos
 lammps
 Lammps
 LAMMPS
 lammpsplot
 Lampis
 Lamoureux
+Lanczos
 Lande
 Landron
 langevin
@@ -1848,6 +1879,7 @@ Microscale
 midnightblue
 mie
 Mie
+Mij
 Mikami
 Militzer
 Minary
@@ -1946,6 +1978,7 @@ Muccioli
 mui
 Mukherjee
 Mulders
+mult
 multi
 multibody
 Multibody
@@ -1990,6 +2023,7 @@ Nakano
 nall
 namespace
 namespaces
+namedtuple
 nan
 NaN
 Nandor
@@ -2226,6 +2260,7 @@ Okamoto
 O'Keefe
 OKeefe
 oldlace
+olecular
 Oleinik
 Olfason
 olivedrab
@@ -2332,6 +2367,7 @@ peachpuff
 Pearlman
 Pedersen
 peID
+PEigenDense
 Peng
 peptide
 peratom
@@ -2560,6 +2596,8 @@ rdf
 RDideal
 rdx
 reacter
+realTypeMap
+real_t
 README
 realtime
 reamin
@@ -2744,6 +2782,7 @@ Schuring
 Schwen
 screenshot
 screenshots
+Scripps
 Scripta
 sdk
 sdpd
@@ -3072,10 +3111,12 @@ Tmin
 tmp
 tN
 Tobias
+Tohoku
 tokenizer
 tokyo
 tol
 Toennies
+tomic
 toolchain
 topologies
 Toporov
@@ -3136,6 +3177,8 @@ tu
 Tuckerman
 tue
 tunable
+tuple
+tuples
 Turkand
 Tutein
 tweakable
@@ -3430,6 +3473,7 @@ Yuh
 yukawa
 Yukawa
 Yusof
+Yuya
 yx
 yy
 yz