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convert URLs to https where possible, check URLs for bit rot and update or remove

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Axel Kohlmeyer
2022-09-24 08:02:18 -04:00
parent a0caf34d71
commit b37c145352
54 changed files with 207 additions and 212 deletions
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doc/src/Python_examples.rst
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@ -43,26 +43,18 @@ Note that for AtomEye, you need version 3, and there is a line in the
scripts that specifies the path and name of the executable. See the
AtomEye web pages for more details:
* `http://li.mit.edu/Archive/Graphics/A/ <atomeye_>`_
* `http://li.mit.edu/Archive/Graphics/A3/A3.html <atomeye3_>`_
* `http://li.mit.edu/Archive/Graphics/A/ <http://li.mit.edu/Archive/Graphics/A/>`_
* `http://li.mit.edu/Archive/Graphics/A3/A3.html <http://li.mit.edu/Archive/Graphics/A3/A3.html>`_
.. _atomeye: http://li.mit.edu/Archive/Graphics/A/
.. _atomeye3: http://li.mit.edu/Archive/Graphics/A3/A3.html
The latter link is to AtomEye 3 which has the scripting
capability needed by these Python scripts.
The latter link is to AtomEye 3 which has the scripting capability
needed by these Python scripts.
Note that for PyMol, you need to have built and installed the
open-source version of PyMol in your Python, so that you can import it
from a Python script. See the PyMol web pages for more details:
* `https://www.pymol.org <pymolhome_>`_
* `https://github.com/schrodinger/pymol-open-source <pymolopen_>`_
.. _pymolhome: https://www.pymol.org
.. _pymolopen: https://github.com/schrodinger/pymol-open-source
* `https://www.pymol.org <https://www.pymol.org>`_
* `https://github.com/schrodinger/pymol-open-source <https://github.com/schrodinger/pymol-open-source>`_
The latter link is to the open-source version.