From b4fabf0d0cddd1ffd33afb2d98105255c337ad03 Mon Sep 17 00:00:00 2001 From: sjplimp Date: Thu, 3 Jan 2008 23:28:08 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1291 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/compute_sum.html | 10 +++++----- doc/compute_sum.txt | 10 +++++----- doc/dump.html | 8 ++++---- doc/dump.txt | 8 ++++---- doc/fix_ave_atom.html | 12 +++++------- doc/fix_ave_atom.txt | 12 +++++------- doc/fix_ave_spatial.html | 10 +++++----- doc/fix_ave_spatial.txt | 10 +++++----- doc/variable.html | 12 ++++++------ doc/variable.txt | 12 ++++++------ 10 files changed, 50 insertions(+), 54 deletions(-) diff --git a/doc/compute_sum.html b/doc/compute_sum.html index cb0d2c572f..90d07ae00b 100644 --- a/doc/compute_sum.html +++ b/doc/compute_sum.html @@ -62,11 +62,11 @@ component) or can be the result of a compute or variable must produce a per-atom quantity, not a global quantity.

Computes that produce per-atom quantities are those -which have the word atom in their style name. Currently the only -fix that produces per-atom quantities is the fix -ave/atom command. Variables of -style atom are the only ones that can be used with this compute -since all other variable stylse produce global quantities. +which have the word atom in their style name. See the doc pages for +individual fixes to determine which ones produce per-atom +quantities. Variables of style atom are the only +ones that can be used with this compute since all other variable +styles produce global quantities.

If a single value is specified this compute produces a global scalar value. If multiple values are specified, this compute produces a diff --git a/doc/compute_sum.txt b/doc/compute_sum.txt index ff41961e7c..c545a9a46e 100644 --- a/doc/compute_sum.txt +++ b/doc/compute_sum.txt @@ -54,11 +54,11 @@ component) or can be the result of a "compute"_compute.html or variable must produce a per-atom quantity, not a global quantity. "Computes"_compute.html that produce per-atom quantities are those -which have the word {atom} in their style name. Currently the only -fix that produces per-atom quantities is the "fix -ave/atom"_fix_ave_atom.html command. "Variables"_variable.html of -style {atom} are the only ones that can be used with this compute -since all other variable stylse produce global quantities. +which have the word {atom} in their style name. See the doc pages for +individual "fixes"_fix.html to determine which ones produce per-atom +quantities. "Variables"_variable.html of style {atom} are the only +ones that can be used with this compute since all other variable +styles produce global quantities. If a single value is specified this compute produces a global scalar value. If multiple values are specified, this compute produces a diff --git a/doc/dump.html b/doc/dump.html index ba2e06eee1..cbe3f9b522 100644 --- a/doc/dump.html +++ b/doc/dump.html @@ -258,10 +258,10 @@ the M-length per-atom vector calculated by the compute.

The f_ID and f_ID[N] keywords allow scalar or vector per-atom quantities calculated by a fix to be output. The ID in the keyword should be replaced by the actual ID of the fix that has been -defined previously in the input script. Currently the fix -ave/atom command is the only fix that calculates -per-atom quantities. Since it can time-average per-atom quantities -produced by any compute, fix, or atom-style +defined previously in the input script. The fix +ave/atom command is one that calculates per-atom +quantities. Since it can time-average per-atom quantities produced by +any compute, fix, or atom-style variable, this allows those time-averaged results to be written to a dump file.

diff --git a/doc/dump.txt b/doc/dump.txt index 5640e62f65..19b34bb8cf 100644 --- a/doc/dump.txt +++ b/doc/dump.txt @@ -248,10 +248,10 @@ the M-length per-atom vector calculated by the compute. The {f_ID} and {f_ID\[N\]} keywords allow scalar or vector per-atom quantities calculated by a "fix"_fix.html to be output. The ID in the keyword should be replaced by the actual ID of the fix that has been -defined previously in the input script. Currently the "fix -ave/atom"_fix_ave_atom.html command is the only fix that calculates -per-atom quantities. Since it can time-average per-atom quantities -produced by any "compute"_compute.html, "fix"_fix.html, or atom-style +defined previously in the input script. The "fix +ave/atom"_fix_ave_atom.html command is one that calculates per-atom +quantities. Since it can time-average per-atom quantities produced by +any "compute"_compute.html, "fix"_fix.html, or atom-style "variable"_variable.html, this allows those time-averaged results to be written to a dump file. diff --git a/doc/fix_ave_atom.html b/doc/fix_ave_atom.html index 36c4019df5..b687a956da 100644 --- a/doc/fix_ave_atom.html +++ b/doc/fix_ave_atom.html @@ -64,13 +64,11 @@ you wish to time-average global quantities from a compute, fix, or variable, then see the fix ave/time command.

Computes that produce per-atom quantities are those -which have the word atom in their style name. Currently the only -fix that produces per-atom quantities is this fix itself, namely fix -ave/atom. Thus this fix could be used to produce output that would be -the input for another fix ave/atom command, though that would be a -strange mode of use. Variables of style atom are -the only ones that can be used with this fix since all other styles of -variable produce global quantities. +which have the word atom in their style name. See the doc pages for +inidividual fixes to determine which ones produce per-atom +quantities. Variables of style atom are the only +ones that can be used with this fix since all other styles of variable +produce global quantities.

diff --git a/doc/fix_ave_atom.txt b/doc/fix_ave_atom.txt index 4fe0f939aa..d0d111625c 100644 --- a/doc/fix_ave_atom.txt +++ b/doc/fix_ave_atom.txt @@ -53,13 +53,11 @@ you wish to time-average global quantities from a compute, fix, or variable, then see the "fix ave/time"_fix_ave_time.html command. "Computes"_compute.html that produce per-atom quantities are those -which have the word {atom} in their style name. Currently the only -fix that produces per-atom quantities is this fix itself, namely fix -ave/atom. Thus this fix could be used to produce output that would be -the input for another fix ave/atom command, though that would be a -strange mode of use. "Variables"_variable.html of style {atom} are -the only ones that can be used with this fix since all other styles of -variable produce global quantities. +which have the word {atom} in their style name. See the doc pages for +inidividual "fixes"_fix.html to determine which ones produce per-atom +quantities. "Variables"_variable.html of style {atom} are the only +ones that can be used with this fix since all other styles of variable +produce global quantities. :line diff --git a/doc/fix_ave_spatial.html b/doc/fix_ave_spatial.html index fd9587cda3..7c9e9b7c25 100644 --- a/doc/fix_ave_spatial.html +++ b/doc/fix_ave_spatial.html @@ -87,11 +87,11 @@ compute, fix, or variable, then see the fix ave/time command.

Computes that produce per-atom quantities are those -which have the word atom in their style name. Currently the only -fix that produces per-atom quantities is fix -ave/atom. Variables of style -atom are the only ones that can be used with this fix since all -other styles of variable produce global quantities. +which have the word atom in their style name. See the doc pages for +individual fixes to determine which ones produce per-atom +quantities. Variables of style atom are the only +ones that can be used with this fix since all other styles of variable +produce global quantities.

diff --git a/doc/fix_ave_spatial.txt b/doc/fix_ave_spatial.txt index 7b31cc4db9..1324cf08d2 100644 --- a/doc/fix_ave_spatial.txt +++ b/doc/fix_ave_spatial.txt @@ -71,11 +71,11 @@ compute, fix, or variable, then see the "fix ave/time"_fix_ave_time.html command. "Computes"_compute.html that produce per-atom quantities are those -which have the word {atom} in their style name. Currently the only -fix that produces per-atom quantities is "fix -ave/atom"_fix_ave_atom.html. "Variables"_variable.html of style -{atom} are the only ones that can be used with this fix since all -other styles of variable produce global quantities. +which have the word {atom} in their style name. See the doc pages for +individual "fixes"_fix.html to determine which ones produce per-atom +quantities. "Variables"_variable.html of style {atom} are the only +ones that can be used with this fix since all other styles of variable +produce global quantities. :line diff --git a/doc/variable.html b/doc/variable.html index 75b5c49194..d31356eb1d 100644 --- a/doc/variable.html +++ b/doc/variable.html @@ -221,12 +221,12 @@ references, fix references, and references to other variables. Other variables v_abc, v_x, etc -

Note that the formula for equal-style variables cannot use any formula -element that produces per-atom values, namely atom vectors, a compute -that produces per-atom values, a fix that produces per-atoms values, -or an atom-style variable. The formula for atom-style variables can -use these quantities, as well as quantities that produce a global -scalar or vector, e.g. a compute or fix that produces global +

Note that a formula for equal-style variables cannot use any formula +element that produces per-atom values. This includes atom vectors, a +compute that produces per-atom values, a fix that produces per-atoms +values, or an atom-style variable. A formula for an atom-style +variables can use these elements, as well as elements that produce a +global scalar or vector, e.g. a compute or fix that produces global quantities.

The thermo keywords allowed in a formula are those defined by the diff --git a/doc/variable.txt b/doc/variable.txt index 5e44621883..097128a7f2 100644 --- a/doc/variable.txt +++ b/doc/variable.txt @@ -216,12 +216,12 @@ Compute references: c_ID, c_ID\[N\] Fix references: f_ID, f_ID\[N\] Other variables: v_abc, v_x, etc :tb(s=:) -Note that the formula for equal-style variables cannot use any formula -element that produces per-atom values, namely atom vectors, a compute -that produces per-atom values, a fix that produces per-atoms values, -or an atom-style variable. The formula for atom-style variables can -use these quantities, as well as quantities that produce a global -scalar or vector, e.g. a compute or fix that produces global +Note that a formula for equal-style variables cannot use any formula +element that produces per-atom values. This includes atom vectors, a +compute that produces per-atom values, a fix that produces per-atoms +values, or an atom-style variable. A formula for an atom-style +variables can use these elements, as well as elements that produce a +global scalar or vector, e.g. a compute or fix that produces global quantities. The thermo keywords allowed in a formula are those defined by the