git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6699 f3b2605a-c512-4ea7-a41b-209d697bcdaa
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@ -1,6 +1,7 @@
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# 3d Lennard-Jones melt
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# 3d Lennard-Jones melt
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newton off
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newton off
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package gpu force/neigh 0 1 1
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variable x index 2
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variable x index 2
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variable y index 2
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variable y index 2
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@ -27,7 +28,6 @@ pair_coeff 1 1 1.0 1.0 2.5
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neighbor 0.3 bin
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neighbor 0.3 bin
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neigh_modify delay 0 every 20 check no
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neigh_modify delay 0 every 20 check no
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fix 0 all gpu force/neigh 0 1 1
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fix 1 all nve
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fix 1 all nve
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thermo 100
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thermo 100
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@ -1,6 +1,7 @@
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# 3d Lennard-Jones melt
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# 3d Lennard-Jones melt
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newton off
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newton off
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package gpu force/neigh 0 1 1 threadsi_per_atom 8
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variable x index 2
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variable x index 2
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variable y index 2
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variable y index 2
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@ -27,7 +28,6 @@ pair_coeff 1 1 1.0 1.0 5.0
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neighbor 0.3 bin
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neighbor 0.3 bin
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neigh_modify delay 0 every 20 check no
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neigh_modify delay 0 every 20 check no
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fix 0 all gpu force/neigh 0 1 1 threadsi_per_atom 8
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fix 1 all nve
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fix 1 all nve
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thermo 100
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thermo 100
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@ -2,6 +2,8 @@
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units metal
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units metal
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newton off
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newton off
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package gpu force/neigh 0 1 1
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atom_style charge
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atom_style charge
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read_data data.phosphate
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read_data data.phosphate
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@ -25,8 +27,6 @@ thermo 100
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timestep 0.001
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timestep 0.001
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fix 0 all gpu force/neigh 0 1 1
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fix 1 all npt temp 400 400 0.01 iso 1000.0 1000.0 1.0
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fix 1 all npt temp 400 400 0.01 iso 1000.0 1000.0 1.0
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run 1000
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run 1000
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unfix 1
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unfix 1
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@ -1,6 +1,7 @@
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# Rhodopsin model
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# Rhodopsin model
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newton off
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newton off
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package gpu force/neigh 0 1 1
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variable x index 2
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variable x index 2
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variable y index 2
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variable y index 2
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@ -23,7 +24,6 @@ read_data data.rhodo
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replicate $x $y $z
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replicate $x $y $z
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fix 0 all gpu force/neigh 0 1 1
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fix 1 all shake 0.0001 5 0 m 1.0 a 232
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fix 1 all shake 0.0001 5 0 m 1.0 a 232
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fix 2 all npt temp 300.0 300.0 100.0 &
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fix 2 all npt temp 300.0 300.0 100.0 &
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z 0.0 0.0 1000.0 mtk no pchain 0 tchain 1
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z 0.0 0.0 1000.0 mtk no pchain 0 tchain 1
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