diff --git a/doc/Section_packages.html b/doc/Section_packages.html index e166116085..ae604bbf98 100644 --- a/doc/Section_packages.html +++ b/doc/Section_packages.html @@ -44,24 +44,24 @@ packages, more details are provided.

- + - - + + - + - + diff --git a/doc/Section_packages.txt b/doc/Section_packages.txt index 8e9556f82b..e3575fd5f7 100644 --- a/doc/Section_packages.txt +++ b/doc/Section_packages.txt @@ -39,24 +39,24 @@ packages, more details are provided. The current list of standard packages is as follows: Package, Description, Author(s), Doc page, Example, Library -ASPHERE, aspherical particles, -, "howto"_Section_howto.html#howto_14, ellipse, - +ASPHERE, aspherical particles, -, "Section_howto"_Section_howto.html#howto_14, ellipse, - CLASS2, class 2 force fields, -, "pair_style lj/class2"_pair_class2.html, -, - COLLOID, colloidal particles, -, "atom_style colloid"_atom_style.html, colloid, - DIPOLE, point dipole particles, -, "pair_style dipole/cut"_pair_dipole.html, dipole, - FLD, Fast Lubrication Dynamics, Kumar & Bybee & Higdon (1), "pair_style lubricateU"_pair_lubricateU.html, -, - GPU, GPU-enabled potentials, Mike Brown (ORNL), "Section accelerate"_Section_accelerate.html#acc_3, gpu, lib/gpu -GRANULAR, granular systems, -, "howto"_Section_howto.html#howto_6, pour, - -KIM, openKIM potentials, Smirichinski & Elliot & Tadmor (3), pair_style kim"_pair_kim.html, kim, lib/kim +GRANULAR, granular systems, -, "Section_howto"_Section_howto.html#howto_6, pour, - +KIM, openKIM potentials, Smirichinski & Elliot & Tadmor (3), "pair_style kim"_pair_kim.html, kim, lib/kim KSPACE, long-range Coulombic solvers, -, "kspace_style"_kspace_style.html, peptide, - MANYBODY, many-body potentials, -, "pair_style tersoff"_pair_tersoff.html, shear, - MEAM, modified EAM potential, Greg Wagner (Sandia), "pair_style meam"_pair_meam.html, meam, lib/meam MC, Monte Carlo options, -, "fix gcmc"_fix_gcmc.html, -, - -MOLECULE, molecular system force fields, -, "howto"_Section_howto.html#howto_3, peptide, - +MOLECULE, molecular system force fields, -, "Section_howto"_Section_howto.html#howto_3, peptide, - OPT, optimized pair potentials, Fischer & Richie & Natoli (2), "Section accelerate"_Section_accelerate.html#acc_1, -, - PERI, Peridynamics models, Mike Parks (Sandia), "pair_style peri"_pair_peri.html, peri, - POEMS, coupled rigid body motion, Rudra Mukherjee (JPL), "fix poems"_fix_poems.html, rigid, lib/poems REAX, ReaxFF potential, Aidan Thompson (Sandia), "pair_style reax"_pair_reax.html, reax, lib/reax -REPLICA, multi-replica methods, -, "howto"_Section_howto.html#howto_5, tad, - +REPLICA, multi-replica methods, -, "Section_howto"_Section_howto.html#howto_5, tad, - SHOCK, shock loading methods, -, "fix msst"_fix_msst.html, -, - SRD, stochastic rotation dynamics, -, "fix srd"_fix_srd.html, srd, - XTC, dumps in XTC format, -, "dump"_dump.html, -, - diff --git a/doc/min_modify.html b/doc/min_modify.html index ced08b2c6a..e052b633a4 100644 --- a/doc/min_modify.html +++ b/doc/min_modify.html @@ -20,7 +20,7 @@ 
keyword = dmax or line
   dmax value = max
     max = maximum distance for line search to move (distance units)
-  line value = backtrack or quadraticor forcezero
+  line value = backtrack or quadratic or forcezero
     backtrack,quadratic,forcezero = style of linesearch to use
diff --git a/doc/min_modify.txt b/doc/min_modify.txt index 3cca32a854..27bab8f96d 100644 --- a/doc/min_modify.txt +++ b/doc/min_modify.txt @@ -16,7 +16,7 @@ one or more keyword/value pairs may be listed :ulb,l keyword = {dmax} or {line} {dmax} value = max max = maximum distance for line search to move (distance units) - {line} value = {backtrack} or {quadratic}or {forcezero} + {line} value = {backtrack} or {quadratic} or {forcezero} backtrack,quadratic,forcezero = style of linesearch to use :pre :ule
Package Description Author(s) Doc page Example Library
ASPHERE aspherical particles - howto ellipse -
ASPHERE aspherical particles - Section_howto ellipse -
CLASS2 class 2 force fields - pair_style lj/class2 - -
COLLOID colloidal particles - atom_style colloid colloid -
DIPOLE point dipole particles - pair_style dipole/cut dipole -
FLD Fast Lubrication Dynamics Kumar & Bybee & Higdon (1) pair_style lubricateU - -
GPU GPU-enabled potentials Mike Brown (ORNL) Section accelerate gpu lib/gpu
GRANULAR granular systems - >howto pour -
KIM openKIM potentials Smirichinski & Elliot & Tadmor (3) pair_style kim kim lib/kim
GRANULAR granular systems - Section_howto pour -
KIM openKIM potentials Smirichinski & Elliot & Tadmor (3) pair_style kim kim lib/kim
KSPACE long-range Coulombic solvers - kspace_style peptide -
MANYBODY many-body potentials - pair_style tersoff shear -
MEAM modified EAM potential Greg Wagner (Sandia) pair_style meam meam lib/meam
MC Monte Carlo options - fix gcmc - -
MOLECULE molecular system force fields - howto peptide -
MOLECULE molecular system force fields - Section_howto peptide -
OPT optimized pair potentials Fischer & Richie & Natoli (2) Section accelerate - -
PERI Peridynamics models Mike Parks (Sandia) pair_style peri peri -
POEMS coupled rigid body motion Rudra Mukherjee (JPL) fix poems rigid lib/poems
REAX ReaxFF potential Aidan Thompson (Sandia) pair_style reax reax lib/reax
REPLICA multi-replica methods - howto tad -
REPLICA multi-replica methods - Section_howto tad -
SHOCK shock loading methods - fix msst - -
SRD stochastic rotation dynamics - fix srd srd -
XTC dumps in XTC format - dump - -