Tally works and example readmes addes

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# LAMMPS GJF-2GJ THERMOSTAT EXAMPLE W/ PYTHON
## GJF-2GJ THERMOSTAT
This directory contains a python script to run NVT simulations using the GJF-2GJ thermostat.
The script will vary the timestep and write thermodynamic output to screen.
This script has True/False options to change how you would like to dump/write your output.
Example:
```
NP=4 #number of processors
mpirun -np $NP python gjf.py
```
## Required LAMMPS packages: MOLECULE package
## LAMMPS COMPILE MODE: SHLIB
## LAMMPS OPTIONAL INSTALL: make install-python
## Required Python packages: mpi4py