add API to library/python interface to extract the MPI communicator
This commit is contained in:
@ -21,6 +21,11 @@ event as atoms are migrating between sub-domains.
|
||||
|
||||
-----------------------
|
||||
|
||||
.. doxygenfunction:: lammps_get_mpi_comm
|
||||
:project: progguide
|
||||
|
||||
-----------------------
|
||||
|
||||
.. doxygenfunction:: lammps_get_natoms
|
||||
:project: progguide
|
||||
|
||||
|
||||
@ -332,6 +332,8 @@ class lammps(object):
|
||||
|
||||
self.lib.lammps_version.argtypes = [c_void_p]
|
||||
|
||||
self.lib.lammps_get_mpi_comm.argtypes = [c_void_p]
|
||||
|
||||
self.lib.lammps_decode_image_flags.argtypes = [self.c_imageint, POINTER(c_int*3)]
|
||||
|
||||
self.lib.lammps_extract_atom.argtypes = [c_void_p, c_char_p]
|
||||
@ -601,6 +603,28 @@ class lammps(object):
|
||||
|
||||
# -------------------------------------------------------------------------
|
||||
|
||||
def get_mpi_comm(self):
|
||||
"""Get the MPI communicator in use by the current LAMMPS instance
|
||||
|
||||
This is a wrapper around the :cpp:func:`lammps_get_mpi_comm` function
|
||||
of the C-library interface. It will return ``None`` if either the
|
||||
LAMMPS library was compiled without MPI support or the mpi4py
|
||||
Python module is not available.
|
||||
|
||||
:return: MPI communicator
|
||||
:rtype: MPI_Comm
|
||||
"""
|
||||
|
||||
if self.has_mpi4py and self.has_mpi_support:
|
||||
from mpi4py import MPI
|
||||
f_comm = self.lib.lammps_get_mpi_comm(self.lmp)
|
||||
c_comm = MPI.Comm.f2py(f_comm)
|
||||
return c_comm
|
||||
else:
|
||||
return None
|
||||
|
||||
# -------------------------------------------------------------------------
|
||||
|
||||
def file(self, path):
|
||||
"""Read LAMMPS commands from a file.
|
||||
|
||||
|
||||
@ -532,6 +532,40 @@ int lammps_version(void *handle)
|
||||
return atoi(lmp->universe->num_ver);
|
||||
}
|
||||
|
||||
|
||||
/* ---------------------------------------------------------------------- */
|
||||
|
||||
/** Return current LAMMPS world communicator as integer
|
||||
*
|
||||
\verbatim embed:rst
|
||||
|
||||
This will take the LAMMPS "world" communicator and convert it to an
|
||||
integer using ``MPI_Comm_c2f()``, so it is equivalent to the
|
||||
corresponding MPI communicator in Fortran. This way it can be safely
|
||||
passed around between different programming languages. To convert it
|
||||
to the C language representation use ``MPI_Comm_f2c()``.
|
||||
|
||||
If LAMMPS was compiled with MPI_STUBS, this function returns -1.
|
||||
|
||||
.. versionadded:: 15Sep2020
|
||||
|
||||
\endverbatim
|
||||
* \sa lammps_open_fortran
|
||||
*
|
||||
* \param handle pointer to a previously created LAMMPS instance
|
||||
* \return Fortran representation of the LAMMPS world communicator */
|
||||
|
||||
int lammps_get_mpi_comm(void *handle)
|
||||
{
|
||||
#ifdef MPI_STUBS
|
||||
return -1;
|
||||
#else
|
||||
LAMMPS *lmp = (LAMMPS *) handle;
|
||||
MPI_Fint f_comm = MPI_Comm_c2f(lmp->world);
|
||||
return f_comm;
|
||||
#endif
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------------------------- */
|
||||
|
||||
/** Return the total number of atoms in the system.
|
||||
|
||||
@ -98,6 +98,7 @@ void lammps_commands_string(void *handle, const char *str);
|
||||
* ----------------------------------------------------------------------- */
|
||||
|
||||
int lammps_version(void *handle);
|
||||
int lammps_get_mpi_comm(void* handle);
|
||||
double lammps_get_natoms(void *handle);
|
||||
double lammps_get_thermo(void *handle, char *keyword);
|
||||
|
||||
|
||||
Reference in New Issue
Block a user