diff --git a/doc/src/Run_options.txt b/doc/src/Run_options.txt index 742d38d456..98b6f92cbc 100644 --- a/doc/src/Run_options.txt +++ b/doc/src/Run_options.txt @@ -363,20 +363,20 @@ run: read_restart restartfile (remap) write_data datafile keyword value ... :pre -Note that the specified restartfile and/or datafile can have the -wild-card character "*". The restartfile can also have the wild-card -character "%". The meaning of these characters is explained on the +The specified restartfile and/or datafile can have the wild-card +character "*". The restartfile can also have the wild-card character +"%". The meaning of these characters is explained on the "read_restart"_read_restart.html and "write_data"_write_data.html doc pages. The use of "%" means that a parallel restart file can be read. Note that a filename such as file.* will need to be enclosed in quotes to avoid shell expansion of the "*" character. -Note that following restartfile, the optional word "remap" can be -used. This has the effect of adding it to the -"read_restart"_read_restart.html command, as explained on its doc -page. This is useful if reading the restart file triggers an error -that atoms have been lost. In that case, use of the remap flag should -allow the data file to still be produced. +Following restartfile, the optional word "remap" can be used. This +has the effect of adding it to the "read_restart"_read_restart.html +command, as explained on its doc page. This is useful if reading the +restart file triggers an error that atoms have been lost. In that +case, use of the remap flag should allow the data file to still be +produced. The syntax following restartfile (or remap), namely diff --git a/doc/src/angle_coeff.txt b/doc/src/angle_coeff.txt index 4c217bae7d..5dc9c13381 100644 --- a/doc/src/angle_coeff.txt +++ b/doc/src/angle_coeff.txt @@ -60,26 +60,14 @@ doc page for details. :line -Here is an alphabetic list of angle styles defined in LAMMPS. Click on -the style to display the formula it computes and coefficients -specified by the associated "angle_coeff"_angle_coeff.html command. - -Note that there are also additional angle styles submitted by users -which are included in the LAMMPS distribution. The full list of all -angle styles is on the "Commands bond"_Commands_bond.html#angle doc +The list of all angle styles defined in LAMMPS is given on the +"angle_style"_angle_style.html doc page. They are also listed in more +compact form on the "Commands angle"_Commands_bond.html#angle doc page. -"angle_style none"_angle_none.html - turn off angle interactions -"angle_style hybrid"_angle_hybrid.html - define multiple styles of angle interactions :ul - -"angle_style charmm"_angle_charmm.html - CHARMM angle -"angle_style class2"_angle_class2.html - COMPASS (class 2) angle -"angle_style cosine"_angle_cosine.html - cosine angle potential -"angle_style cosine/delta"_angle_cosine_delta.html - difference of cosines angle potential -"angle_style cosine/periodic"_angle_cosine_periodic.html - DREIDING angle -"angle_style cosine/squared"_angle_cosine_squared.html - cosine squared angle potential -"angle_style harmonic"_angle_harmonic.html - harmonic angle -"angle_style table"_angle_table.html - tabulated by angle :ul +On either of those pages, click on the style to display the formula it +computes and its coefficients as specified by the associated +angle_coeff command. :line diff --git a/doc/src/bond_coeff.txt b/doc/src/bond_coeff.txt index 7485fa3d8d..1280ae3fb0 100644 --- a/doc/src/bond_coeff.txt +++ b/doc/src/bond_coeff.txt @@ -56,25 +56,13 @@ corresponds to the 1st example above would be listed as :line -Here is an alphabetic list of bond styles defined in LAMMPS. Click on -the style to display the formula it computes and coefficients -specified by the associated "bond_coeff"_bond_coeff.html command. +The list of all bond styles defined in LAMMPS is given on the +"bond_style"_bond_style.html doc page. They are also listed in more +compact form on the "Commands bond"_Commands_bond.html doc page. -Note that here are also additional bond styles submitted by users -which are included in the LAMMPS distribution. The full list of all -bond styles is on the "Commands bond"_Commands_bond.html doc page. - -"bond_style none"_bond_none.html - turn off bonded interactions -"bond_style hybrid"_bond_hybrid.html - define multiple styles of bond interactions :ul - -"bond_style class2"_bond_class2.html - COMPASS (class 2) bond -"bond_style fene"_bond_fene.html - FENE (finite-extensible non-linear elastic) bond -"bond_style fene/expand"_bond_fene_expand.html - FENE bonds with variable size particles -"bond_style harmonic"_bond_harmonic.html - harmonic bond -"bond_style morse"_bond_morse.html - Morse bond -"bond_style nonlinear"_bond_nonlinear.html - nonlinear bond -"bond_style quartic"_bond_quartic.html - breakable quartic bond -"bond_style table"_bond_table.html - tabulated by bond length :ul +On either of those pages, click on the style to display the formula it +computes and its coefficients as specified by the associated +bond_coeff command. :line diff --git a/doc/src/dihedral_coeff.txt b/doc/src/dihedral_coeff.txt index 1db69e40d5..718a73144e 100644 --- a/doc/src/dihedral_coeff.txt +++ b/doc/src/dihedral_coeff.txt @@ -69,24 +69,14 @@ necessary. :line -Here is an alphabetic list of dihedral styles defined in LAMMPS. Click on -the style to display the formula it computes and coefficients -specified by the associated "dihedral_coeff"_dihedral_coeff.html command. +The list of all dihedral styles defined in LAMMPS is given on the +"dihedral_style"_dihedral_style.html doc page. They are also listed +in more compact form on the "Commands +dihedral"_Commands_bond.html#dihedral doc page. -Note that there are also additional dihedral styles submitted by users -which are included in the LAMMPS distribution. The full list of all -dihedral styles is on the "Commands bond"_Commands_bond.html#dihedral -doc page. - -"dihedral_style none"_dihedral_none.html - turn off dihedral interactions -"dihedral_style hybrid"_dihedral_hybrid.html - define multiple styles of dihedral interactions :ul - -"dihedral_style charmm"_dihedral_charmm.html - CHARMM dihedral -"dihedral_style class2"_dihedral_class2.html - COMPASS (class 2) dihedral -"dihedral_style harmonic"_dihedral_harmonic.html - harmonic dihedral -"dihedral_style helix"_dihedral_helix.html - helix dihedral -"dihedral_style multi/harmonic"_dihedral_multi_harmonic.html - multi-harmonic dihedral -"dihedral_style opls"_dihedral_opls.html - OPLS dihedral :ul +On either of those pages, click on the style to display the formula it +computes and its coefficients as specified by the associated +dihedral_coeff command. :line diff --git a/doc/src/improper_coeff.txt b/doc/src/improper_coeff.txt index 8ed65f9535..1d2083d7ad 100644 --- a/doc/src/improper_coeff.txt +++ b/doc/src/improper_coeff.txt @@ -62,22 +62,14 @@ page for details. :line -Here is an alphabetic list of improper styles defined in LAMMPS. Click on -the style to display the formula it computes and coefficients -specified by the associated "improper_coeff"_improper_coeff.html command. +The list of all improper styles defined in LAMMPS is given on the +"improper_style"_improper_style.html doc page. They are also listed +in more compact form on the "Commands +improper"_Commands_bond.html#improper doc page. -Note that there are also additional improper styles submitted by users -which are included in the LAMMPS distribution. The full list of all -improper styles is on the "Commands bond"_Commands_bond.html#improper -doc page. - -"improper_style none"_improper_none.html - turn off improper interactions -"improper_style hybrid"_improper_hybrid.html - define multiple styles of improper interactions :ul - -"improper_style class2"_improper_class2.html - COMPASS (class 2) improper -"improper_style cvff"_improper_cvff.html - CVFF improper -"improper_style harmonic"_improper_harmonic.html - harmonic improper -"improper_style umbrella"_improper_umbrella.html - DREIDING improper :ul +On either of those pages, click on the style to display the formula it +computes and its coefficients as specified by the associated +improper_coeff command. :line diff --git a/doc/src/pair_coeff.txt b/doc/src/pair_coeff.txt index be2699285f..a1bbf94e83 100644 --- a/doc/src/pair_coeff.txt +++ b/doc/src/pair_coeff.txt @@ -114,21 +114,8 @@ The alphabetic list of pair styles defined in LAMMPS is given on the "pair_style"_pair_style.html doc page. They are also listed in more compact form on the "Commands pair"_Commands_pair.html doc page. -Click on the style to display the formula it computes, arguments -specified in the pair_style command, and coefficients specified by the -associated "pair_coeff"_pair_coeff.html command. - -Note that there are also additional pair styles (not listed on the -"pair_style"_pair_style.html doc page) submitted by users which are -included in the LAMMPS distribution. The full list of all pair styles -is on the "Commands pair"_Commands_pair.html doc page. - -There are also additional accelerated pair styles (not listed on the -"pair_style"_pair_style.html doc page) included in the LAMMPS -distribution for faster performance on CPUs, GPUs, and KNLs. The -individual style names on the "Commands pair"_Commands_pair.html doc -page are followed by one or more of (g,i,k,o,t) to indicate which -accelerated styles exist. +Click on the style to display the formula it computes and its +coefficients as specified by the associated pair_coeff command. :line