Merge branch 'develop' of https://www.github.com/lammps/lammps into kmc

This commit is contained in:
Jacob Tavenner
2025-04-14 15:37:47 -06:00
1579 changed files with 96240 additions and 33294 deletions

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@ -129,7 +129,7 @@
<div class="wy-grid-for-nav">
{#- SIDE NAV, TOGGLES ON MOBILE #}
<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-scroll" id="lammps-navbar">
<div class="wy-side-nav-search" {% if theme_style_nav_header_background %} style="background: {{theme_style_nav_header_background}}" {% endif %}>
{%- block sidebartitle %}
@ -137,6 +137,7 @@
{# the master_doc variable was renamed to root_doc in Sphinx 4 (master_doc still exists in later Sphinx versions) #}
{%- set _logo_url = logo_url|default(pathto('_static/' + (logo or ""), 1)) %}
{%- set _root_doc = root_doc|default(master_doc) %}
<div id="sidebar-top-target"></div>
<a href="{{ pathto(_root_doc) }}"{% if not theme_logo_only %} class="icon icon-home"{% endif %}>
{% if not theme_logo_only %}{{ project }}{% endif %}
{%- if logo or logo_url %}
@ -172,6 +173,15 @@
</div>
{%- endblock %}
</div>
<div style="position: fixed; bottom: 0px; width: 300px; height: 64px; padding: 4px; background-color: #272525; text-align: center">
<button onclick="JumpToTop()" class="fa fa-caret-up" style="color:white; background-color: #272525; border-style: none;" title="Go to top">&nbsp;Go to top</button>
</div>
<script>
let navbar = document.getElementById("lammps-navbar");
function JumpToTop() {
navbar.scrollTop = 0;
}
</script>
</nav>
<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">

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@ -208,13 +208,11 @@ html_favicon = '_static/lammps.ico'
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
html_static_path = ['_static',]
# These paths are either relative to html_static_path
# or fully qualified paths (eg. https://...)
html_css_files = [
'css/lammps.css',
]
html_css_files = ['css/lammps.css',]
# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied

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@ -8,6 +8,7 @@ abi
abo
Abramyan
absTol
Acad
Acc
Accelerys
Accelrys
@ -99,6 +100,7 @@ AMD
amino
Amirjalayer
Amit
amsmath
amu
Amzallag
analytical
@ -108,6 +110,7 @@ Andrienko
Andzelm
Ang
anglegrad
angleoffset
angletangrad
angmom
angmomx
@ -127,6 +130,7 @@ Antisymmetrized
antisymmetry
anton
Antonelli
anysize
api
apolar
Apoorva
@ -335,6 +339,7 @@ bodyflag
bodyforce
bodystyle
Bogaerts
Bogoliubov
Bogusz
Bohrs
boltz
@ -354,6 +359,8 @@ boostostat
boostostatting
Boresch
borophene
bosonic
bosons
Botero
Botu
Bouguet
@ -612,6 +619,7 @@ Courant
covalent
covalently
covariance
cp
cpp
cpu
cradius
@ -717,6 +725,7 @@ dashpot
dat
datafile
datatype
dataset
datums
Davidchack
Daw
@ -728,6 +737,7 @@ dE
De
deallocate
deallocated
deallocation
debye
Debye
Decius
@ -848,6 +858,7 @@ DNi
Dobnikar
Dobson
docenv
docstrings
Dodds
dodgerblue
dof
@ -904,6 +915,7 @@ dUs
Duval
dV
dvector
dvipng
dVx
dW
dx
@ -1074,6 +1086,7 @@ estretch
esu
esub
esw
esynch
et
etag
etap
@ -1137,6 +1150,7 @@ fdotr
fdt
fe
Fehlberg
Feldman
Fellinger
femtosecond
femtoseconds
@ -1146,6 +1160,8 @@ Fennell
fep
FEP
fermi
fermion
fermions
Fermionic
Ferrand
fexternal
@ -1186,6 +1202,7 @@ Finnis
Fiorin
fitpod
fivebody
fixcom
fixID
fj
Fji
@ -1206,6 +1223,7 @@ fmag
fmass
fmatch
fmm
fmmode
fmt
fmtlib
fmx
@ -1214,12 +1232,14 @@ fmz
fN
Fn
fname
fncychap
fno
Fnudge
foces
Fock
Fogarty
Foiles
fontawesome
fopenmp
forceclear
forestgreen
@ -1314,10 +1334,12 @@ geturl
gewald
Gezelter
gfile
gflag
Gflop
gfortran
ghostneigh
ghostwhite
Ghahremanpour
Giacomo
GiB
gif
@ -1352,6 +1374,7 @@ Goga
Goldfarb
Gompper
Gonzalez-Melchor
Goodsell
googlemail
googletest
Gordan
@ -1405,6 +1428,7 @@ Gunsteren
Gunzenmuller
Guo
gw
gyre
gyromagnetic
gz
gzip
@ -1475,6 +1499,7 @@ hgrid
hhmrr
Hibbs
Higdon
Higer
hiID
Hijazi
Hilger
@ -1530,10 +1555,12 @@ hydrostatically
hydroxyl
Hynninen
Hyoungki
hypcap
hyperdynamics
hyperparameters
hyperplane
hyperradius
hyperref
hyperspherical
hysteretic
hz
@ -1543,6 +1570,7 @@ Ibanez
ibar
ibm
icc
iceblue
ico
icosahedral
idealgas
@ -1583,6 +1611,7 @@ Impropers
imulator
includelink
incompressible
incompressibility
incrementing
indenter
indenters
@ -1762,6 +1791,7 @@ Kadiri
Kai
Kalia
Kamberaj
Kamrin
Kantorovich
Kapfer
Kapil
@ -2061,6 +2091,7 @@ lubricateU
lucas
lucy
Luding
Lueptow
Luijten
lunit
Lunkad
@ -2510,6 +2541,7 @@ Ndof
Ndouble
ndx
neb
needspace
neel
Neel
Neelov
@ -2533,6 +2565,7 @@ Nevery
Nevins
newfile
Newns
newstep
newtype
nextsort
Neyts
@ -2593,6 +2626,7 @@ nn
nnodes
npits
npj
nmpimd
nO
Nocedal
nocite
@ -2721,6 +2755,8 @@ nylo
nz
Nz
nzlo
obabo
ochre
ocl
octahedral
octants
@ -2735,6 +2771,7 @@ Okazaki
O'Keefe
OKeefe
oldlace
oldtop
olecular
Oleinik
Olfason
@ -2748,6 +2785,7 @@ omegaz
Omelyan
omp
OMP
ondulated
oneAPI
onebody
onelevel
@ -2783,6 +2821,7 @@ orthorhombic
Ortner
os
oso
Ottino
Otype
Ouadfel
Ouldridge
@ -2911,12 +2950,14 @@ picogram
picograms
picosecond
picoseconds
pict
pid
piecewise
Pieniazek
Pieter
pIm
pimd
pimdb
Piola
pIp
pipelining
@ -2930,6 +2971,7 @@ pKa
pKb
pKs
planeforce
plastically
Plathe
Plimpton
plog
@ -3080,9 +3122,11 @@ qE
qeff
qelectron
qeq
qeqr
Qamar
QeQ
QEq
QEqR
qfactor
qfile
qi
@ -3225,6 +3269,7 @@ resquared
REsquared
restartfile
restartinfo
reStructuredText
Restrepo
rethrowing
Revenga
@ -3232,6 +3277,7 @@ rewrap
rezwanur
rfac
rfile
rflag
rg
Rg
Rhaphson
@ -3266,6 +3312,7 @@ RiRj
Risi
Rix
Riy
Rizzi
rj
Rj
Rjinner
@ -3682,6 +3729,7 @@ Sz
Tabbernor
tabinner
tabstyle
tabulary
Tadmor
Tafipolsky
tagID
@ -3698,6 +3746,7 @@ Tanmoy
Tartakovsky
taskset
taubi
taup
Tavenner
taylor
tb
@ -3732,6 +3781,7 @@ tgnpt
tgnvt
th
Thakkar
Thakur
Thaokar
thb
thei
@ -3770,6 +3820,7 @@ Tigran
Tij
Tildesley
Timan
timeflag
timeI
timespan
timestamp
@ -3777,6 +3828,7 @@ timestamps
timestep
timestepping
timesteps
titlesec
TiN
TiO
Tirado
@ -3832,6 +3884,7 @@ Tref
Tretyakov
tri
triangleflag
triaxial
Tribello
triclinic
Triclinic
@ -3911,6 +3964,7 @@ uloop
ulsph
Ultrafast
uMech
Umbanhowar
umin
Umin
un
@ -3952,6 +4006,7 @@ untilted
Unwin
uparrow
upenn
upquote
upto
Urbakh
Urbana
@ -3965,6 +4020,7 @@ username
usleep
usolve
usr
utf
util
utils
utsa
@ -4138,6 +4194,7 @@ Workum
Worley
wormlike
wpbe
wrapfig
Wriggers
writedata
Wuppertal
@ -4168,6 +4225,7 @@ Xia
Xiaohu
Xiaowang
Xie
xindy
xk
xlat
xlattice