diff --git a/doc/src/Speed.rst b/doc/src/Speed.rst index 02eae1f3fa..dfd5f4bf3e 100644 --- a/doc/src/Speed.rst +++ b/doc/src/Speed.rst @@ -14,7 +14,7 @@ Intel Xeon Phi co-processors. The `Benchmark page `_ of the LAMMPS website gives performance results for the various accelerator -packages discussed on the :doc:`Speed packages ` doc +packages discussed on the :doc:`Accelerator packages ` page, for several of the standard LAMMPS benchmark problems, as a function of problem size and number of compute nodes, on different hardware platforms. diff --git a/doc/src/accel_styles.rst b/doc/src/accel_styles.rst index 27a798d731..228953335c 100644 --- a/doc/src/accel_styles.rst +++ b/doc/src/accel_styles.rst @@ -1,7 +1,7 @@ Styles with a *gpu*, *intel*, *kk*, *omp*, or *opt* suffix are functionally the same as the corresponding style without the suffix. They have been optimized to run faster, depending on your available -hardware, as discussed on the :doc:`Speed packages ` doc +hardware, as discussed on the :doc:`Accelerator packages ` page. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. @@ -13,5 +13,5 @@ You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the :doc:`-suffix command-line switch ` when you invoke LAMMPS, or you can use the :doc:`suffix ` command in your input script. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. diff --git a/doc/src/angle_charmm.rst b/doc/src/angle_charmm.rst index 0da31e54e7..28c20bde5e 100644 --- a/doc/src/angle_charmm.rst +++ b/doc/src/angle_charmm.rst @@ -59,7 +59,7 @@ radian\^2. Styles with a *gpu*, *intel*, *kk*, *omp*, or *opt* suffix are functionally the same as the corresponding style without the suffix. They have been optimized to run faster, depending on your available -hardware, as discussed on the :doc:`Speed packages ` doc +hardware, as discussed on the :doc:`Accelerator packages ` page. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. @@ -71,7 +71,7 @@ You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the :doc:`-suffix command-line switch ` when you invoke LAMMPS, or you can use the :doc:`suffix ` command in your input script. -See :doc:`Speed packages ` page for more +See :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. ---------- diff --git a/doc/src/atom_style.rst b/doc/src/atom_style.rst index bade8c2f79..08e3dc745e 100644 --- a/doc/src/atom_style.rst +++ b/doc/src/atom_style.rst @@ -322,7 +322,7 @@ styles; see the :doc:`Modify ` doc page. Styles with a *kk* suffix are functionally the same as the corresponding style without the suffix. They have been optimized to run faster, depending on your available hardware, as discussed in on -the :doc:`Speed packages ` doc page. The accelerated +the :doc:`Accelerator packages ` page. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. @@ -339,7 +339,7 @@ by including their suffix, or you can use the :doc:`-suffix command-line switch ` when you invoke LAMMPS, or you can use the :doc:`suffix ` command in your input script. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. Restrictions diff --git a/doc/src/fix_setforce.rst b/doc/src/fix_setforce.rst index fd1eb70c4a..d344aa153b 100644 --- a/doc/src/fix_setforce.rst +++ b/doc/src/fix_setforce.rst @@ -92,7 +92,7 @@ precession vectors instead of the forces. Styles with a *gpu*, *intel*, *kk*, *omp*, or *opt* suffix are functionally the same as the corresponding style without the suffix. They have been optimized to run faster, depending on your available -hardware, as discussed on the :doc:`Speed packages ` doc +hardware, as discussed on the :doc:`Accelerator packages ` page. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. @@ -107,7 +107,7 @@ You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the :doc:`-suffix command-line switch ` when you invoke LAMMPS, or you can use the :doc:`suffix ` command in your input script. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. ---------- diff --git a/doc/src/improper_harmonic.rst b/doc/src/improper_harmonic.rst index 42cd3b75c5..e40c4e559b 100644 --- a/doc/src/improper_harmonic.rst +++ b/doc/src/improper_harmonic.rst @@ -67,7 +67,7 @@ radian\^2. Styles with a *gpu*, *intel*, *kk*, *omp*, or *opt* suffix are functionally the same as the corresponding style without the suffix. They have been optimized to run faster, depending on your available -hardware, as discussed on the :doc:`Speed packages ` doc +hardware, as discussed on the :doc:`Accelerator packages ` page. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. @@ -81,7 +81,7 @@ by including their suffix, or you can use the :doc:`-suffix command-line switch ` when you invoke LAMMPS, or you can use the :doc:`suffix ` command in your input script. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. ---------- diff --git a/doc/src/kspace_style.rst b/doc/src/kspace_style.rst index be854581ed..6c0e95ffaf 100644 --- a/doc/src/kspace_style.rst +++ b/doc/src/kspace_style.rst @@ -417,7 +417,7 @@ relative RMS error. Styles with a *gpu*, *intel*, *kk*, *omp*, or *opt* suffix are functionally the same as the corresponding style without the suffix. They have been optimized to run faster, depending on your available -hardware, as discussed on the :doc:`Speed packages ` doc +hardware, as discussed on the :doc:`Accelerator packages ` page. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. @@ -439,7 +439,7 @@ These accelerated styles are part of the GPU, INTEL, KOKKOS, OPENMP, and OPT packages respectively. They are only enabled if LAMMPS was built with those packages. See the :doc:`Build package ` page for more info. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. ---------- diff --git a/doc/src/package.rst b/doc/src/package.rst index 0fc71b48f9..2cf772ea5a 100644 --- a/doc/src/package.rst +++ b/doc/src/package.rst @@ -166,7 +166,7 @@ intel", or "package omp" command with default settings. set, either to default values or to specified settings. I.e. settings from previous invocations do not persist across multiple invocations. -See the :doc:`Speed packages ` page for more details +See the :doc:`Accelerator packages ` page for more details about using the various accelerator packages for speeding up LAMMPS simulations. diff --git a/doc/src/pair_agni.rst b/doc/src/pair_agni.rst index 8e91e57b72..ed0ae686ee 100644 --- a/doc/src/pair_agni.rst +++ b/doc/src/pair_agni.rst @@ -69,7 +69,7 @@ and input files are provided in the examples/PACKAGES/agni directory. Styles with *omp* suffix is functionally the same as the corresponding style without the suffix. They have been optimized to run faster, -depending on your available hardware, as discussed on the :doc:`Speed packages ` doc page. The accelerated style takes +depending on your available hardware, as discussed on the :doc:`Accelerator packages ` page. The accelerated style takes the same arguments and should produce the same results, except for round-off and precision issues. @@ -80,7 +80,7 @@ You can specify the accelerated style explicitly in your input script by including their suffix, or you can use the :doc:`-suffix command-line switch ` when you invoke LAMMPS, or you can use the :doc:`suffix ` command in your input script. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. ---------- diff --git a/doc/src/pair_hybrid.rst b/doc/src/pair_hybrid.rst index 9c3cd6622a..c5a7c8afe3 100644 --- a/doc/src/pair_hybrid.rst +++ b/doc/src/pair_hybrid.rst @@ -386,7 +386,7 @@ coefficients to 0.0. Styles with a *gpu*, *intel*, *kk*, *omp*, or *opt* suffix are functionally the same as the corresponding style without the suffix. They have been optimized to run faster, depending on your available -hardware, as discussed on the :doc:`Speed packages ` doc +hardware, as discussed on the :doc:`Accelerator packages ` page. Pair style *hybrid/scaled* does (currently) not support the *gpu*, *omp*, *kk*, or *intel* suffix. @@ -405,7 +405,7 @@ You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the :doc:`-suffix command-line switch ` when you invoke LAMMPS, or you can use the :doc:`suffix ` command in your input script. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. ---------- diff --git a/doc/src/pair_sw.rst b/doc/src/pair_sw.rst index f207b25863..15d402f028 100644 --- a/doc/src/pair_sw.rst +++ b/doc/src/pair_sw.rst @@ -162,7 +162,7 @@ taken from the ij and ik pairs (:math:`\sigma`, *a*, :math:`\gamma`) Styles with a *gpu*, *intel*, *kk*, *omp*, or *opt* suffix are functionally the same as the corresponding style without the suffix. They have been optimized to run faster, depending on your available -hardware, as discussed on the :doc:`Speed packages ` doc +hardware, as discussed on the :doc:`Accelerator packages ` page. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. @@ -179,7 +179,7 @@ additional 5 to 10 percent performance improvement when the Stillinger-Weber parameters p and q are set to 4 and 0 respectively. These parameters are common for modeling silicon and water. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. ---------- diff --git a/doc/src/region.rst b/doc/src/region.rst index d891a69410..932c8e8fb1 100644 --- a/doc/src/region.rst +++ b/doc/src/region.rst @@ -374,7 +374,7 @@ sub-regions can be defined with the *open* keyword. Styles with a *gpu*, *intel*, *kk*, *omp*, or *opt* suffix are functionally the same as the corresponding style without the suffix. They have been optimized to run faster, depending on your available -hardware, as discussed on the :doc:`Speed packages ` doc +hardware, as discussed on the :doc:`Accelerator packages ` page. The accelerated styles take the same arguments and should produce the same results, except for round-off and precision issues. @@ -389,7 +389,7 @@ You can specify the accelerated styles explicitly in your input script by including their suffix, or you can use the :doc:`-suffix command-line switch ` when you invoke LAMMPS, or you can use the :doc:`suffix ` command in your input script. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. ---------- diff --git a/doc/src/run_style.rst b/doc/src/run_style.rst index bcfa3d7b54..61ee8fad85 100644 --- a/doc/src/run_style.rst +++ b/doc/src/run_style.rst @@ -125,7 +125,7 @@ screen.0 by default; see the :doc:`-plog and -pscreen command-line switches ` page for performance +See the :doc:`Accelerator packages ` page for performance details of the speed-up offered by the *verlet/split* style. One important performance consideration is the assignment of logical processors in the 2 partitions to the physical cores of a parallel @@ -298,7 +298,7 @@ can use the :doc:`-suffix command-line switch ` when you invoke LAMMPS, or you can use the :doc:`suffix ` command in your input script. -See the :doc:`Speed packages ` page for more +See the :doc:`Accelerator packages ` page for more instructions on how to use the accelerated styles effectively. ----------