show/explain alternate LJ potential using the minimum energy distance
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@ -43,8 +43,7 @@ given by
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.. math::
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.. math::
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E = 4 \epsilon \left[ \left(\frac{\sigma}{r}\right)^{12} -
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E = 4 \epsilon \left[ \left(\frac{\sigma}{r}\right)^{12} -
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\left(\frac{\sigma}{r}\right)^6 \right]
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\left(\frac{\sigma}{r}\right)^6 \right] \qquad r < r_c
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\qquad r < r_c
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:math:`r_c` is the cutoff.
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:math:`r_c` is the cutoff.
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@ -64,12 +63,24 @@ file or restart files read by the :doc:`read_data <read_data>` or
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* :math:`\sigma` (distance units)
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* :math:`\sigma` (distance units)
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* LJ cutoff (distance units)
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* LJ cutoff (distance units)
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Note that :math:`\sigma` is defined in the LJ formula as the zero-crossing
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distance for the potential, not as the energy minimum at :math:`2^{\frac{1}{6}} \sigma`.
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The last coefficient is optional. If not specified, the global
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The last coefficient is optional. If not specified, the global
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LJ cutoff specified in the pair_style command is used.
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LJ cutoff specified in the pair_style command is used.
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Note that :math:`\sigma` is defined in the LJ formula as the
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zero-crossing distance for the potential, *not* as the energy minimum at
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:math:`r_0 = 2^{\frac{1}{6}} \sigma`. The _same_ potential function becomes:
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.. math::
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E = \epsilon \left[ \left(\frac{r_0}{r}\right)^{12} -
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2 \left(\frac{r_0}{r}\right)^6 \right] \qquad r < r_c
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When using the minimum as reference width. In the literature both
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formulations are used, but the describe the same potential, only the
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:math:`\sigma` value must be computed by :math:`\sigma = r_0 /
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2^{\frac{1}{6}}` for use with LAMMPS, if this latter formulation is
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used.
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----------
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----------
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A version of these styles with a soft core, *lj/cut/soft*, suitable
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A version of these styles with a soft core, *lj/cut/soft*, suitable
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@ -1,4 +1,4 @@
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Sphinx >= 5.0.0, <7.0.0
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Sphinx >= 5.3.0, <7.1.0
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sphinxcontrib-spelling
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sphinxcontrib-spelling
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sphinxcontrib-jquery
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sphinxcontrib-jquery
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git+https://github.com/akohlmey/sphinx-fortran@parallel-read
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git+https://github.com/akohlmey/sphinx-fortran@parallel-read
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