Update numpy_wrapper.py
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@ -277,6 +277,60 @@ class numpy_wrapper:
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# -------------------------------------------------------------------------
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# -------------------------------------------------------------------------
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def gather_angles(self):
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""" Retrieve global list of angles as NumPy array
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This is a wrapper around :py:meth:`lammps.gather_angles() <lammps.lammps.gather_angles()>`
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It behaves the same as the original method, but returns a NumPy array instead
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of a ``ctypes`` list.
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.. versionadded:: 28Jan2023
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:return: the requested data as a 2d-integer numpy array
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:rtype: numpy.array(nangles,4)
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"""
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import numpy as np
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nangles, value = self.lmp.gather_angles()
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return np.ctypeslib.as_array(value).reshape(nangles,4)
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# -------------------------------------------------------------------------
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def gather_dihedrals(self):
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""" Retrieve global list of dihedrals as NumPy array
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This is a wrapper around :py:meth:`lammps.gather_dihedrals() <lammps.lammps.gather_dihedrals()>`
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It behaves the same as the original method, but returns a NumPy array instead
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of a ``ctypes`` list.
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.. versionadded:: 28Jan2023
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:return: the requested data as a 2d-integer numpy array
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:rtype: numpy.array(ndihedrals,5)
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"""
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import numpy as np
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ndihedrals, value = self.lmp.gather_dihedrals()
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return np.ctypeslib.as_array(value).reshape(ndihedrals,5)
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# -------------------------------------------------------------------------
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def gather_impropers(self):
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""" Retrieve global list of impropers as NumPy array
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This is a wrapper around :py:meth:`lammps.gather_impropers() <lammps.lammps.gather_impropers()>`
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It behaves the same as the original method, but returns a NumPy array instead
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of a ``ctypes`` list.
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.. versionadded:: 28Jan2023
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:return: the requested data as a 2d-integer numpy array
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:rtype: numpy.array(nimpropers,5)
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"""
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import numpy as np
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nimpropers, value = self.lmp.gather_impropers()
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return np.ctypeslib.as_array(value).reshape(nimpropers,5)
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# -------------------------------------------------------------------------
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def fix_external_get_force(self, fix_id):
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def fix_external_get_force(self, fix_id):
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"""Get access to the array with per-atom forces of a fix external instance with a given fix ID.
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"""Get access to the array with per-atom forces of a fix external instance with a given fix ID.
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