diff --git a/lib/atc/build.log b/lib/atc/build.log
deleted file mode 100644
index 15c1d1901c..0000000000
--- a/lib/atc/build.log
+++ /dev/null
@@ -1,166 +0,0 @@
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ATC_Coupling.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ATC_CouplingEnergy.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ATC_CouplingMass.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ATC_CouplingMomentum.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ATC_CouplingMomentumEnergy.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ATC_Method.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ATC_Transfer.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ATC_TransferKernel.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ATC_TransferPartitionOfUnity.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c AtomicRegulator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c AtomToMoleculeTransfer.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c BodyForce.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c CauchyBorn.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c CBLattice.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c CbPotential.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ChargeRegulator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ConcentrationRegulator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ElasticTimeIntegrator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ElectronChargeDensity.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ElectronDragPower.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ElectronFlux.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ElectronHeatCapacity.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ElectronHeatFlux.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ElectronPhononExchange.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ExtrinsicModel.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ExtrinsicModelDriftDiffusion.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ExtrinsicModelElectrostatic.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ExtrinsicModelTwoTemperature.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c FE_Element.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c FE_Engine.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c FE_Interpolate.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c FE_Mesh.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c FieldEulerIntegrator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c FieldManager.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c Function.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c FundamentalAtomicQuantity.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ImplicitSolveOperator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c InterscaleOperators.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c KD_Tree.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c KernelFunction.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c Kinetostat.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c KinetoThermostat.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c LammpsInterface.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c LinearSolver.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c Material.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c Matrix.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c MeshReader.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c MoleculeSet.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c MPI_Wrappers.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c NonLinearSolver.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c OutputManager.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c PaqAtcUtility.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ParDiagonalMatrix.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ParSparseMatrix.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c PerAtomQuantityLibrary.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c PerPairQuantity.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c PhysicsModel.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c PoissonSolver.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c PolynomialSolver.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c PrescribedDataManager.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c Quadrature.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c SchrodingerSolver.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c SpeciesTimeIntegrator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c Stress.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ThermalTimeIntegrator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c Thermostat.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c TimeFilter.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c TimeIntegrator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c TransferLibrary.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c TransferOperator.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c Vector.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c ViscousStress.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationChargeDiffusion.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationDiffusion.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationElectronContinuity.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationElectronMomentum.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationElectronTemperature.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationMassDiffusion.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationMomentum.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationPhononTemperature.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationPoisson.cpp
-mpic++ -O -g -I../../src -fPIC -DMPICH_IGNORE_CXX_SEEK -c WeakEquationSchrodinger.cpp
-ar rv libatc.a ATC_Coupling.o ATC_CouplingEnergy.o ATC_CouplingMass.o ATC_CouplingMomentum.o ATC_CouplingMomentumEnergy.o ATC_Method.o ATC_Transfer.o ATC_TransferKernel.o ATC_TransferPartitionOfUnity.o AtomicRegulator.o AtomToMoleculeTransfer.o BodyForce.o CauchyBorn.o CBLattice.o CbPotential.o ChargeRegulator.o ConcentrationRegulator.o ElasticTimeIntegrator.o ElectronChargeDensity.o ElectronDragPower.o ElectronFlux.o ElectronHeatCapacity.o ElectronHeatFlux.o ElectronPhononExchange.o ExtrinsicModel.o ExtrinsicModelDriftDiffusion.o ExtrinsicModelElectrostatic.o ExtrinsicModelTwoTemperature.o FE_Element.o FE_Engine.o FE_Interpolate.o FE_Mesh.o FieldEulerIntegrator.o FieldManager.o Function.o FundamentalAtomicQuantity.o ImplicitSolveOperator.o InterscaleOperators.o KD_Tree.o KernelFunction.o Kinetostat.o KinetoThermostat.o LammpsInterface.o LinearSolver.o Material.o Matrix.o MeshReader.o MoleculeSet.o MPI_Wrappers.o NonLinearSolver.o OutputManager.o PaqAtcUtility.o ParDiagonalMatrix.o ParSparseMatrix.o PerAtomQuantityLibrary.o PerPairQuantity.o PhysicsModel.o PoissonSolver.o PolynomialSolver.o PrescribedDataManager.o Quadrature.o SchrodingerSolver.o SpeciesTimeIntegrator.o Stress.o ThermalTimeIntegrator.o Thermostat.o TimeFilter.o TimeIntegrator.o TransferLibrary.o TransferOperator.o Vector.o ViscousStress.o WeakEquationChargeDiffusion.o WeakEquationDiffusion.o WeakEquationElectronContinuity.o WeakEquationElectronMomentum.o WeakEquationElectronTemperature.o WeakEquationMassDiffusion.o WeakEquationMomentum.o WeakEquationPhononTemperature.o WeakEquationPoisson.o WeakEquationSchrodinger.o
-ar: creating libatc.a
-a - ATC_Coupling.o
-a - ATC_CouplingEnergy.o
-a - ATC_CouplingMass.o
-a - ATC_CouplingMomentum.o
-a - ATC_CouplingMomentumEnergy.o
-a - ATC_Method.o
-a - ATC_Transfer.o
-a - ATC_TransferKernel.o
-a - ATC_TransferPartitionOfUnity.o
-a - AtomicRegulator.o
-a - AtomToMoleculeTransfer.o
-a - BodyForce.o
-a - CauchyBorn.o
-a - CBLattice.o
-a - CbPotential.o
-a - ChargeRegulator.o
-a - ConcentrationRegulator.o
-a - ElasticTimeIntegrator.o
-a - ElectronChargeDensity.o
-a - ElectronDragPower.o
-a - ElectronFlux.o
-a - ElectronHeatCapacity.o
-a - ElectronHeatFlux.o
-a - ElectronPhononExchange.o
-a - ExtrinsicModel.o
-a - ExtrinsicModelDriftDiffusion.o
-a - ExtrinsicModelElectrostatic.o
-a - ExtrinsicModelTwoTemperature.o
-a - FE_Element.o
-a - FE_Engine.o
-a - FE_Interpolate.o
-a - FE_Mesh.o
-a - FieldEulerIntegrator.o
-a - FieldManager.o
-a - Function.o
-a - FundamentalAtomicQuantity.o
-a - ImplicitSolveOperator.o
-a - InterscaleOperators.o
-a - KD_Tree.o
-a - KernelFunction.o
-a - Kinetostat.o
-a - KinetoThermostat.o
-a - LammpsInterface.o
-a - LinearSolver.o
-a - Material.o
-a - Matrix.o
-a - MeshReader.o
-a - MoleculeSet.o
-a - MPI_Wrappers.o
-a - NonLinearSolver.o
-a - OutputManager.o
-a - PaqAtcUtility.o
-a - ParDiagonalMatrix.o
-a - ParSparseMatrix.o
-a - PerAtomQuantityLibrary.o
-a - PerPairQuantity.o
-a - PhysicsModel.o
-a - PoissonSolver.o
-a - PolynomialSolver.o
-a - PrescribedDataManager.o
-a - Quadrature.o
-a - SchrodingerSolver.o
-a - SpeciesTimeIntegrator.o
-a - Stress.o
-a - ThermalTimeIntegrator.o
-a - Thermostat.o
-a - TimeFilter.o
-a - TimeIntegrator.o
-a - TransferLibrary.o
-a - TransferOperator.o
-a - Vector.o
-a - ViscousStress.o
-a - WeakEquationChargeDiffusion.o
-a - WeakEquationDiffusion.o
-a - WeakEquationElectronContinuity.o
-a - WeakEquationElectronMomentum.o
-a - WeakEquationElectronTemperature.o
-a - WeakEquationMassDiffusion.o
-a - WeakEquationMomentum.o
-a - WeakEquationPhononTemperature.o
-a - WeakEquationPoisson.o
-a - WeakEquationSchrodinger.o
diff --git a/lib/atc/libatc.a b/lib/atc/libatc.a
deleted file mode 100644
index 00a6afc0bb..0000000000
Binary files a/lib/atc/libatc.a and /dev/null differ
diff --git a/lib/atc/svn.stdout b/lib/atc/svn.stdout
deleted file mode 100644
index b29a1230af..0000000000
--- a/lib/atc/svn.stdout
+++ /dev/null
@@ -1,89 +0,0 @@
-Deleting       atc/ATC_Error.h
-Deleting       atc/ATC_HardyKernel.cpp
-Deleting       atc/ATC_HardyKernel.h
-Deleting       atc/ATC_Transfer.cpp
-Deleting       atc/ATC_Transfer.h
-Deleting       atc/ATC_TransferHardy.cpp
-Deleting       atc/ATC_TransferHardy.h
-Deleting       atc/ATC_TransferThermal.cpp
-Deleting       atc/ATC_TransferThermal.h
-Deleting       atc/ATC_TransferUtility.cpp
-Deleting       atc/ATC_TypeDefs.h
-Deleting       atc/Array.h
-Deleting       atc/Array2D.h
-Deleting       atc/AtomicRegulator.cpp
-Deleting       atc/AtomicRegulator.h
-Deleting       atc/CG.h
-Deleting       atc/CloneVector.h
-Deleting       atc/DenseMatrix.h
-Deleting       atc/DenseVector.h
-Deleting       atc/DiagonalMatrix.h
-Deleting       atc/ElasticTimeIntegrator.cpp
-Deleting       atc/ElasticTimeIntegrator.h
-Deleting       atc/ElectronFlux.cpp
-Deleting       atc/ElectronFlux.h
-Deleting       atc/ElectronHeatCapacity.cpp
-Deleting       atc/ElectronHeatCapacity.h
-Deleting       atc/ElectronHeatFlux.cpp
-Deleting       atc/ElectronHeatFlux.h
-Deleting       atc/ElectronPhononExchange.cpp
-Deleting       atc/ElectronPhononExchange.h
-Deleting       atc/ExtrinsicModel.cpp
-Deleting       atc/ExtrinsicModel.h
-Deleting       atc/ExtrinsicModelTwoTemperature.cpp
-Deleting       atc/ExtrinsicModelTwoTemperature.h
-Deleting       atc/FE_Element.cpp
-Deleting       atc/FE_Element.h
-Deleting       atc/FE_Engine.cpp
-Deleting       atc/FE_Engine.h
-Deleting       atc/FE_Mesh.cpp
-Deleting       atc/FE_Mesh.h
-Deleting       atc/FieldEulerIntegrator.cpp
-Deleting       atc/FieldEulerIntegrator.h
-Deleting       atc/GMRES.h
-Deleting       atc/ImplicitSolveOperator.cpp
-Deleting       atc/ImplicitSolveOperator.h
-Deleting       atc/Kinetostat.cpp
-Deleting       atc/Kinetostat.h
-Deleting       atc/LammpsInterface.cpp
-Deleting       atc/LammpsInterface.h
-Adding         atc/Makefile.lammps
-Adding         atc/Makefile.mpic++
-Deleting       atc/Material.cpp
-Deleting       atc/Material.h
-Deleting       atc/Matrix.cpp
-Deleting       atc/Matrix.h
-Deleting       atc/MatrixDef.h
-Deleting       atc/MatrixLibrary.h
-Deleting       atc/OutputManager.cpp
-Deleting       atc/OutputManager.h
-Deleting       atc/PhysicsModel.h
-Deleting       atc/PhysicsModelThermal.cpp
-Deleting       atc/PhysicsModelThermal.h
-Deleting       atc/PhysicsModelTwoTemperature.cpp
-Deleting       atc/PhysicsModelTwoTemperature.h
-Deleting       atc/PrescribedDataManager.cpp
-Deleting       atc/PrescribedDataManager.h
-Deleting       atc/Quadrature.h
-Deleting       atc/Solver.cpp
-Deleting       atc/Solver.h
-Deleting       atc/SparseMatrix-inl.h
-Deleting       atc/SparseMatrix.h
-Deleting       atc/SparseVector-inl.h
-Deleting       atc/SparseVector.h
-Deleting       atc/StringManip.h
-Deleting       atc/Thermostat.cpp
-Deleting       atc/Thermostat.h
-Deleting       atc/TimeFilter.cpp
-Deleting       atc/TimeFilter.h
-Deleting       atc/TimeIntegrator.cpp
-Deleting       atc/TimeIntegrator.h
-Deleting       atc/Utility.h
-Deleting       atc/Vector.cpp
-Deleting       atc/Vector.h
-Deleting       atc/XT_Function.cpp
-Deleting       atc/XT_Function.h
-Adding         atc/build.log
-Adding         atc/svn.stdout
-Transmitting file data ....
-Committed revision 10557.