git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1557 f3b2605a-c512-4ea7-a41b-209d697bcdaa

doc/Section_howto.html

@@ -835,9 +835,9 @@ can be used for thermodynamic output.  The user-defined ID of the
 compute is used along with an optional subscript as part of the
 <A HREF = "thermo_style.html">thermo_style</A> command.  E.g. c_myTemp outputs the
 single scalar value generated by the compute; c_myTemp[2] outputs
-the 2nd vector value.  Note that there is a <A HREF = "compute_sum.html">compute
-sum</A> command which sums per-atom quantities into a
-global scalar or vector.
+the 2nd vector value.  Note that there is a <A HREF = "compute_reduce.html">compute
+reduce</A> command which can sum per-atom quantities
+into a global scalar or vector.
 </P>
 <P><A HREF = "fix.html">Fixes</A> can generate global scalar or vector values which can
 be output with thermodynamic output, e.g. the energy of an indenter's

doc/Section_howto.txt

@@ -829,8 +829,8 @@ compute is used along with an optional subscript as part of the
 "thermo_style"_thermo_style.html command.  E.g. c_myTemp outputs the
 single scalar value generated by the compute; c_myTemp\[2\] outputs
 the 2nd vector value.  Note that there is a "compute
-sum"_compute_sum.html command which sums per-atom quantities into a
-global scalar or vector.
+reduce"_compute_reduce.html command which can sum per-atom quantities
+into a global scalar or vector.
 
 "Fixes"_fix.html can generate global scalar or vector values which can
 be output with thermodynamic output, e.g. the energy of an indenter's

doc/compute_pe.html

@@ -31,7 +31,7 @@ compute molPE all pe bond angle dihedral improper
 entire system of atoms.  The specified group must be "all".  See the
 <A HREF = "compute_pe_atom.html">compute pe/atom</A> command if you want per-atom
 energies.  These per-atom values could be summed for a group of atoms
-via the <A HREF = "compute_sum.html">compute sum</A> command.
+via the <A HREF = "compute_reduce.html">compute reduce</A> command.
 </P>
 <P>The energy is calulated by the various pair, bond, etc potentials
 defined for the simulation.  If no extra keywords are listed, then the

doc/compute_pe.txt

@@ -28,7 +28,7 @@ Define a computation that calculates the potential energy of the
 entire system of atoms.  The specified group must be "all".  See the
 "compute pe/atom"_compute_pe_atom.html command if you want per-atom
 energies.  These per-atom values could be summed for a group of atoms
-via the "compute sum"_compute_sum.html command.
+via the "compute reduce"_compute_reduce.html command.
 
 The energy is calulated by the various pair, bond, etc potentials
 defined for the simulation.  If no extra keywords are listed, then the

doc/compute_pressure.html

@@ -32,7 +32,7 @@ compute 1 all pressure thermo_temp pair bond
 of atoms.  The specified group must be "all".  See the <A HREF = "compute_stress_atom.html">compute
 stress/atom</A> command if you want per-atom
 pressure (stress).  These per-atom values could be summed for a group
-of atoms via the <A HREF = "compute_sum.html">compute sum</A> command.
+of atoms via the <A HREF = "compute_reduce.html">compute reduce</A> command.
 </P>
 <P>The pressure is computed by the formula
 </P>

doc/compute_pressure.txt

@@ -29,7 +29,7 @@ Define a computation that calculates the pressure of the entire system
 of atoms.  The specified group must be "all".  See the "compute
 stress/atom"_compute_stress_atom.html command if you want per-atom
 pressure (stress).  These per-atom values could be summed for a group
-of atoms via the "compute sum"_compute_sum.html command.
+of atoms via the "compute reduce"_compute_reduce.html command.
 
 The pressure is computed by the formula
 

doc/fix_ave_time.html

@@ -77,8 +77,8 @@ must produce a global quantity, not a per-atom quantity.  If you wish
 to spatial- or time-average per-atom quantities from a compute, fix,
 or variable, then see the <A HREF = "fix_ave_spatial.html">fix ave/spatial</A> or
 <A HREF = "fix_ave_atom.html">fix ave/atom</A> commands.  If you wish to sum a
-per-atom quantity into a single global quantity, see the <A HREF = "compute_sum.html">compute
-sum</A> command.
+per-atom quantity into a single global quantity, see the <A HREF = "compute_reduce.html">compute
+reduce</A> command.
 </P>
 <P><A HREF = "compute.html">Computes</A> that produce global quantities are those which
 do not have the word <I>atom</I> in their style name.  Only a few
@@ -111,15 +111,15 @@ averaging is done; values are simply generated on timesteps
 previously defined in the input script.  If no bracketed term is
 appended, the global scalar calculated by the compute is used.  If a
 bracketed term is appended, the Nth vector value calculated by the
-compute is used.  Note that there is a <A HREF = "compute_sum.html">compute sum</A>
-command which sums per-atom quantities into a global scalar or vector
-which can thus be accessed by fix ave/time.  Or it can be a compute
-defined not in your input script, but by <A HREF = "thermo_style.html">thermodynamic
-output</A> or other fixes such as <A HREF = "fix_nvt.html">fix
-nvt</A> or <A HREF = "fix_temp_rescale.html">fix temp/rescale</A>.  See
-the doc pages for these commands which give the IDs of these computes.
-Users can also write code for their own compute styles and <A HREF = "Section_modify.html">add them
-to LAMMPS</A>.
+compute is used.  Note that there is a <A HREF = "compute_reduce.html">compute
+reduce</A> command which can sum per-atom quantities
+into a global scalar or vector which can thus be accessed by fix
+ave/time.  Or it can be a compute defined not in your input script,
+but by <A HREF = "thermo_style.html">thermodynamic output</A> or other fixes such as
+<A HREF = "fix_nvt.html">fix nvt</A> or <A HREF = "fix_temp_rescale.html">fix temp/rescale</A>.
+See the doc pages for these commands which give the IDs of these
+computes.  Users can also write code for their own compute styles and
+<A HREF = "Section_modify.html">add them to LAMMPS</A>.
 </P>
 <P>If a value begins with "f_", a fix ID must follow which has been
 previously defined in the input script.  If no bracketed term is

doc/fix_ave_time.txt

@@ -65,7 +65,7 @@ to spatial- or time-average per-atom quantities from a compute, fix,
 or variable, then see the "fix ave/spatial"_fix_ave_spatial.html or
 "fix ave/atom"_fix_ave_atom.html commands.  If you wish to sum a
 per-atom quantity into a single global quantity, see the "compute
-sum"_compute_sum.html command.
+reduce"_compute_reduce.html command.
 
 "Computes"_compute.html that produce global quantities are those which
 do not have the word {atom} in their style name.  Only a few
@@ -98,15 +98,15 @@ If a value begins with "c_", a compute ID must follow which has been
 previously defined in the input script.  If no bracketed term is
 appended, the global scalar calculated by the compute is used.  If a
 bracketed term is appended, the Nth vector value calculated by the
-compute is used.  Note that there is a "compute sum"_compute_sum.html
-command which sums per-atom quantities into a global scalar or vector
-which can thus be accessed by fix ave/time.  Or it can be a compute
-defined not in your input script, but by "thermodynamic
-output"_thermo_style.html or other fixes such as "fix
-nvt"_fix_nvt.html or "fix temp/rescale"_fix_temp_rescale.html.  See
-the doc pages for these commands which give the IDs of these computes.
-Users can also write code for their own compute styles and "add them
-to LAMMPS"_Section_modify.html.
+compute is used.  Note that there is a "compute
+reduce"_compute_reduce.html command which can sum per-atom quantities
+into a global scalar or vector which can thus be accessed by fix
+ave/time.  Or it can be a compute defined not in your input script,
+but by "thermodynamic output"_thermo_style.html or other fixes such as
+"fix nvt"_fix_nvt.html or "fix temp/rescale"_fix_temp_rescale.html.
+See the doc pages for these commands which give the IDs of these
+computes.  Users can also write code for their own compute styles and
+"add them to LAMMPS"_Section_modify.html.
 
 If a value begins with "f_", a fix ID must follow which has been
 previously defined in the input script.  If no bracketed term is

doc/thermo_style.html

@@ -221,9 +221,10 @@ been defined elsewhere in the input script.  See the
 <A HREF = "compute.html">compute</A> command for details.  Note that only global
 scalar or vector quantities calculated by a compute can be output as
 thermodynamic data; per-atom quantities calcalated by a compute can be
-output by the <A HREF = "dump.html">dump custom</A> command.  There is a <A HREF = "compute_sum.html">compute
-sum</A> command which sums per-atom quantities into a
-global scalar or vector which can be output by thermo_style custom.
+output by the <A HREF = "dump.html">dump custom</A> command.  There is a <A HREF = "compute_reduce.html">compute
+reduce</A> command which can sum per-atom quantities
+into a global scalar or vector which can be output by thermo_style
+custom.
 </P>
 <P>Note that some computes calculate "intensive" global quantities like
 temperature; others calculate "extensive" global quantities like

doc/thermo_style.txt

@@ -216,8 +216,9 @@ been defined elsewhere in the input script.  See the
 scalar or vector quantities calculated by a compute can be output as
 thermodynamic data; per-atom quantities calcalated by a compute can be
 output by the "dump custom"_dump.html command.  There is a "compute
-sum"_compute_sum.html command which sums per-atom quantities into a
-global scalar or vector which can be output by thermo_style custom.
+reduce"_compute_reduce.html command which can sum per-atom quantities
+into a global scalar or vector which can be output by thermo_style
+custom.
 
 Note that some computes calculate "intensive" global quantities like
 temperature; others calculate "extensive" global quantities like