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ATC version 2.0, date: Aug21

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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10638 f3b2605a-c512-4ea7-a41b-209d697bcdaa
This commit is contained in:
rjones
2013-08-21 23:06:07 +00:00
parent 0f69054d68
commit d77ab2f96a
161 changed files with 3811 additions and 2548 deletions
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26
lib/atc/TransferOperator.cpp
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@ -72,8 +72,9 @@ namespace ATC {
// Constructor
//--------------------------------------------------------
FeToAtomTransfer::FeToAtomTransfer(ATC_Method * atc,
DENS_MAN * source) :
ProtectedAtomQuantity<double>(atc,source->nCols()),
DENS_MAN * source,
AtomType atomType) :
ProtectedAtomQuantity<double>(atc,source->nCols(),atomType),
source_(source)
{
source_->register_dependence(this);
@ -378,11 +379,12 @@ namespace ATC {
AtfProjectionReferenced::AtfProjectionReferenced(ATC_Method * atc,
PerAtomQuantity<double> * source,
SPAR_MAN * accumulant,
const DENS_MAT * reference,
DENS_MAN * reference,
DIAG_MAN * weights) :
AtfProjection(atc,source,accumulant,weights),
reference_(reference)
{
if(reference_) reference_->register_dependence(this);
}
//--------------------------------------------------------
@ -390,6 +392,7 @@ namespace ATC {
//--------------------------------------------------------
AtfProjectionReferenced::~AtfProjectionReferenced()
{
if(reference_) reference_->remove_dependence(this);
}
//--------------------------------------------------------
@ -398,7 +401,7 @@ namespace ATC {
void AtfProjectionReferenced::reset_quantity() const
{
global_restriction();
quantity_ -= *reference_;
quantity_ -= (reference_->quantity());
}
//--------------------------------------------------------
@ -743,12 +746,13 @@ namespace ATC {
// Constructor
//--------------------------------------------------------
AtfShapeFunctionMdProjectionReferenced::AtfShapeFunctionMdProjectionReferenced(ATC_Method * atc,
DENS_MAN * source,
const DENS_MAT * reference,
FieldName thisField) :
DENS_MAN * source,
DENS_MAN * reference,
FieldName thisField) :
AtfShapeFunctionMdProjection(atc,source,thisField),
reference_(reference)
{
reference_->register_dependence(this);
}
//--------------------------------------------------------
@ -756,6 +760,7 @@ namespace ATC {
//--------------------------------------------------------
AtfShapeFunctionMdProjectionReferenced::~AtfShapeFunctionMdProjectionReferenced()
{
reference_->remove_dependence(this);
}
//--------------------------------------------------------
@ -764,7 +769,7 @@ namespace ATC {
void AtfShapeFunctionMdProjectionReferenced::reset_quantity() const
{
quantity_ = source_->quantity();
quantity_ -= *reference_;
quantity_ -= reference_->quantity();
atc_->apply_inverse_md_mass_matrix(quantity_,thisField_);
}
@ -779,8 +784,9 @@ namespace ATC {
//--------------------------------------------------------
FtaShapeFunctionProlongation::FtaShapeFunctionProlongation(ATC_Method * atc,
DENS_MAN * source,
SPAR_MAN * shapeFunction) :
FeToAtomTransfer(atc,source),
SPAR_MAN * shapeFunction,
AtomType atomType) :
FeToAtomTransfer(atc,source,atomType),
shapeFunction_(shapeFunction)
{
shapeFunction_->register_dependence(this);