Update doc to reflect a change in the pair style name

doc/src/Commands_all.rst

@@ -127,7 +127,7 @@ additional letter in parenthesis: k = KOKKOS.
    * :doc:`group2ndx <group2ndx>`
    * :doc:`hyper <hyper>`
    * :doc:`kim <kim_commands>`
-   * :doc:`fitpod <fitpod_command>`
+   * :doc:`fitpod <fitpod>`
    * :doc:`mdi <mdi>`
    * :doc:`ndx2group <group2ndx>`
    * :doc:`neb <neb>`

doc/src/Commands_pair.rst

@@ -237,7 +237,7 @@ OPT.
    * :doc:`oxrna2/coaxstk <pair_oxrna2>`
    * :doc:`pace (k) <pair_pace>`
    * :doc:`pace/extrapolation <pair_pace>`
-   * :doc:`mlpod <pair_mlpod>`
+   * :doc:`pod <pair_pod>`
    * :doc:`peri/eps <pair_peri>`
    * :doc:`peri/lps (o) <pair_peri>`
    * :doc:`peri/pmb (o) <pair_peri>`

doc/src/Packages_details.rst

@@ -1829,9 +1829,9 @@ Go to the `lammps` directory and build with the POD package::
 **Supporting info:**
 
 * src/ML-POD: filenames -> commands
-* :doc:`pair_style mlpod <pair_mlpod>`
-* :doc:`command_style fitpod <fitpod_command>`
-* examples/mlpod
+* :doc:`pair_style pod <pair_pod>`
+* :doc:`command_style fitpod <fitpod>`
+* examples/pod
 
 ----------
 

doc/src/Packages_list.rst

@@ -300,8 +300,8 @@ whether an extra library is needed to build and use the package:
      - ext
    * - :ref:`ML-POD <PKG-ML-POD>`
      - Proper orthogonal decomposition potentials
-     - :doc:`pair mlpod <pair_mlpod>`
-     - mlpod
+     - :doc:`pair pod <pair_pod>`
+     - pod
      - ext
    * - :ref:`ML-QUIP <PKG-ML-QUIP>`
      - QUIP/libatoms interface

doc/src/commands_list.rst

@@ -43,7 +43,7 @@ Commands
    echo
    fix
    fix_modify
-   fitpod_command
+   fitpod
    group
    group2ndx
    hyper

doc/src/fitpod.rst

@@ -69,7 +69,7 @@ On successful training, it produces a number of output files:
 * coefficents.txt contains the coeffcients of the POD potential
 
 After training the POD potential, pod.txt and coefficents.txt are two files needed to use the
-POD potential in LAMMPS. See :doc:`pair_style mlpod <pair_mlpod>` for using the POD potential. Examples about training and using POD potentials are found in the directory lammps/examples/mlpod.
+POD potential in LAMMPS. See :doc:`pair_style pod <pair_pod>` for using the POD potential. Examples about training and using POD potentials are found in the directory lammps/examples/PACKAGES/pod.
 
 Parametrized Potential Energy Surface
 """""""""""""""""""""""""""""""""""""
@@ -573,7 +573,7 @@ if LAMMPS was built with that package by setting -D PKG_ML-POD=on. See the :doc:
 Related commands
 """"""""""""""""
 
-:doc:`pair_style mlpod <pair_mlpod>`
+:doc:`pair_style pod <pair_pod>`
 
 Default
 """""""

doc/src/pair_pod.rst

@@ -1,6 +1,6 @@
-.. index:: pair_style mlpod
+.. index:: pair_style pod
 
-pair_style mlpod command
+pair_style pod command
 ========================
 
 Syntax
@@ -8,25 +8,25 @@ Syntax
 
 .. code-block:: LAMMPS
 
-   pair_style mlpod
+   pair_style pod
 
 Examples
 """"""""
 
 .. code-block:: LAMMPS
 
-   pair_style mlpod
+   pair_style pod
    pair_coeff * * pod.txt coefficient.txt
 
 Description
 """""""""""
 
-Pair style *mlpod* defines the proper orthogonal descriptor (POD) potential
+Pair style *pod* defines the proper orthogonal descriptor (POD) potential
 :ref:`(Nguyen) <Nguyen20221>`.  The mathematical definition of the POD potential
-is described from :doc:`fitpod <fitpod_command>`, which is used to fit the POD
+is described from :doc:`fitpod <fitpod>`, which is used to fit the POD
 potential to *ab initio* energy and force data.
 
-Only a single pair_coeff command is used with the *mlpod* style which
+Only a single pair_coeff command is used with the *pod* style which
 specifies a POD parameter file followed by a coefficient file.
 
 The coefficient file (coefficient.txt) contains coefficients for the POD potential. The top of the coefficient
@@ -36,13 +36,15 @@ strict format after that. The first non-blank non-comment line must contain:
 * POD_coefficients: *ncoeff*
 
 This is followed by *ncoeff* coefficients, one per line. The coefficient file
-is generated after training the POD potential using :doc:`fitpod <fitpod_command>`.
+is generated after training the POD potential using :doc:`fitpod <fitpod>`.
 
 The POD parameter file (pod.txt) can contain blank and comment lines (start
 with #) anywhere. Each non-blank non-comment line must contain one
-keyword/value pair. See :doc:`fitpod <fitpod_command>` for the description
+keyword/value pair. See :doc:`fitpod <fitpod>` for the description
 of all the keywords that can be assigned in the parameter file.
 
+Examples about training and using POD potentials are found in the directory lammps/examples/PACKAGES/pod.
+
 ----------
 
 Restrictions
@@ -57,7 +59,7 @@ This pair style does not compute per-atom energies and per-atom stresses.
 Related commands
 """"""""""""""""
 
-:doc:`fitpod <fitpod_command>`,
+:doc:`fitpod <fitpod>`,
 
 Default
 """""""

doc/src/pair_style.rst

@@ -314,7 +314,7 @@ accelerated styles exist.
 * :doc:`oxrna2/xstk <pair_oxrna2>` -
 * :doc:`pace <pair_pace>` - Atomic Cluster Expansion (ACE) machine-learning potential
 * :doc:`pace/extrapolation <pair_pace>` - Atomic Cluster Expansion (ACE) machine-learning potential with extrapolation grades
-* :doc:`mlpod <pair_mlpod>` - Proper orthogonal decomposition (POD) machine-learning potential
+* :doc:`pod <pair_pod>` - Proper orthogonal decomposition (POD) machine-learning potential
 * :doc:`peri/eps <pair_peri>` - peridynamic EPS potential
 * :doc:`peri/lps <pair_peri>` - peridynamic LPS potential
 * :doc:`peri/pmb <pair_peri>` - peridynamic PMB potential