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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14960 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2016-05-09 19:49:32 +00:00
parent 3761006af3
commit e03b050785
42 changed files with 427 additions and 67 deletions
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doc/html/fix_nh.html
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@ -325,7 +325,7 @@ be used with care, since it can be unphysical to dilate some atoms and
not others, because it can introduce large, instantaneous
displacements between a pair of atoms (one dilated, one not) that are
far from the dilation origin. Also note that for atoms not in the fix
group, a separate time integration fix like <span class="xref doc">fix nve</span> or
group, a separate time integration fix like <a class="reference internal" href="fix_nve.html"><span class="doc">fix nve</span></a> or
<a class="reference internal" href="#"><span class="doc">fix nvt</span></a> can be used on them, independent of whether they
are dilated or not.</p>
<hr class="docutils" />
@ -494,7 +494,7 @@ become inefficient due to the highly skewed simulation box.</p>
<p class="last">Unlike the <a class="reference internal" href="fix_temp_berendsen.html"><span class="doc">fix temp/berendsen</span></a> command
which performs thermostatting but NO time integration, these fixes
perform thermostatting/barostatting AND time integration. Thus you
should not use any other time integration fix, such as <span class="xref doc">fix nve</span> on atoms to which this fix is applied. Likewise,
should not use any other time integration fix, such as <a class="reference internal" href="fix_nve.html"><span class="doc">fix nve</span></a> on atoms to which this fix is applied. Likewise,
fix nvt and fix npt should not normally be used on atoms that also
have their temperature controlled by another fix - e.g. by <a class="reference internal" href="#"><span class="doc">fix langevin</span></a> or <a class="reference internal" href="fix_temp_rescale.html"><span class="doc">fix temp/rescale</span></a>
commands.</p>
@ -706,7 +706,7 @@ over time or the atom count becomes very small.</p>
</div>
<div class="section" id="related-commands">
<h2>Related commands</h2>
<p><span class="xref doc">fix nve</span>, <a class="reference internal" href="fix_modify.html"><span class="doc">fix_modify</span></a>,
<p><a class="reference internal" href="fix_nve.html"><span class="doc">fix nve</span></a>, <a class="reference internal" href="fix_modify.html"><span class="doc">fix_modify</span></a>,
<a class="reference internal" href="run_style.html"><span class="doc">run_style</span></a></p>
</div>
<div class="section" id="default">