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Correct ghost atom access out of bounds bug in fix adapt

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This commit is contained in:
Jibril B. Coulibaly
2020-05-18 17:13:46 -05:00
committed by Jibril B. Coulibaly
parent b1ee9ad1fe
commit e1362e9a61
1 changed files with 8 additions and 4 deletions
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12
src/fix_adapt.cpp
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@ -268,8 +268,9 @@ void FixAdapt::post_constructor()
double *radius = atom->radius;
int *mask = atom->mask;
int nlocal = atom->nlocal;
int nall = nlocal + atom->nghost;
for (int i = 0; i < nlocal; i++) {
for (int i = 0; i < nall; i++) {
if (mask[i] & groupbit) vec[i] = radius[i];
else vec[i] = 0.0;
}
@ -291,8 +292,9 @@ void FixAdapt::post_constructor()
double *q = atom->q;
int *mask = atom->mask;
int nlocal = atom->nlocal;
int nall = nlocal + atom->nghost;
for (int i = 0; i < nlocal; i++) {
for (int i = 0; i < nall; i++) {
if (mask[i] & groupbit) vec[i] = q[i];
else vec[i] = 0.0;
}
@ -679,8 +681,9 @@ void FixAdapt::restore_settings()
double *rmass = atom->rmass;
int *mask = atom->mask;
int nlocal = atom->nlocal;
int nall = nlocal + atom->nghost;
for (int i = 0; i < nlocal; i++)
for (int i = 0; i < nall; i++)
if (mask[i] & groupbit) {
if(discflag) density = rmass[i] / (MY_PI * radius[i]*radius[i]);
else density = rmass[i] / (4.0*MY_PI/3.0 *
@ -696,8 +699,9 @@ void FixAdapt::restore_settings()
double *q = atom->q;
int *mask = atom->mask;
int nlocal = atom->nlocal;
int nall = nlocal + atom->nghost;
for (int i = 0; i < nlocal; i++)
for (int i = 0; i < nall; i++)
if (mask[i] & groupbit) q[i] = vec[i];
}
}