diff --git a/lib/atc/LinearSolver.cpp b/lib/atc/LinearSolver.cpp index ea31a64a74..655d6130c4 100644 --- a/lib/atc/LinearSolver.cpp +++ b/lib/atc/LinearSolver.cpp @@ -65,7 +65,7 @@ LinearSolver::LinearSolver( matrixModified_(false), allowReinitialization_(false), homogeneousBCs_(false), - bcs_(NULL), // null implies no contraints will be added later + bcs_(NULL), // null implies no constraints will be added later rhs_(NULL), rhsDense_(), b_(NULL), matrix_(A), diff --git a/python/README b/python/README index f0e95d3c45..86e599a404 100644 --- a/python/README +++ b/python/README @@ -23,7 +23,7 @@ of LAMMPS: >>> from lammps import lammps >>> lmp = lammps() -If that gives no errors, you have succesfully wrapped LAMMPS with +If that gives no errors, you have successfully wrapped LAMMPS with Python. See doc/Section_python.html#py_7 for tests you can then use to run LAMMPS both in serial or parallel thru Python. diff --git a/src/ASPHERE/compute_erotate_asphere.h b/src/ASPHERE/compute_erotate_asphere.h index be1c534923..23e30d7c93 100644 --- a/src/ASPHERE/compute_erotate_asphere.h +++ b/src/ASPHERE/compute_erotate_asphere.h @@ -56,6 +56,6 @@ Self-explanatory. E: Compute erotate/asphere requires extended particles -This compute cannot be used with point paritlces. +This compute cannot be used with point particles. */ diff --git a/src/ASPHERE/compute_temp_asphere.h b/src/ASPHERE/compute_temp_asphere.h index 4688a5612d..d1cce38025 100644 --- a/src/ASPHERE/compute_temp_asphere.h +++ b/src/ASPHERE/compute_temp_asphere.h @@ -65,7 +65,7 @@ Self-explanatory. E: Compute temp/asphere requires extended particles -This compute cannot be used with point paritlces. +This compute cannot be used with point particles. E: Could not find compute ID for temperature bias diff --git a/src/PYTHON/python.h b/src/PYTHON/python.h index 61e5f015e2..5f65e3970b 100644 --- a/src/PYTHON/python.h +++ b/src/PYTHON/python.h @@ -94,12 +94,12 @@ path and name are correct. E: Could not process Python file -The Python code in the specified file was not run sucessfully by +The Python code in the specified file was not run successfully by Python, probably due to errors in the Python code. E: Could not process Python string -The Python code in the here string was not run sucessfully by Python, +The Python code in the here string was not run successfully by Python, probably due to errors in the Python code. E: Could not find Python function @@ -123,7 +123,7 @@ Self-explanatory. E: Python function evaluation failed -The Python function did not run succesfully and/or did not return a +The Python function did not run successfully and/or did not return a value (if it is supposed to return a value). This is probably due to some error condition in the function. diff --git a/src/SHOCK/fix_append_atoms.h b/src/SHOCK/fix_append_atoms.h index d9885998be..cc26acc8b8 100644 --- a/src/SHOCK/fix_append_atoms.h +++ b/src/SHOCK/fix_append_atoms.h @@ -94,7 +94,7 @@ type p (periodic). E: Cannot append atoms to a triclinic box -The simulation box must be defined with edges alligned with the +The simulation box must be defined with edges aligned with the Cartesian axes. E: Fix ID for fix ave/spatial does not exist diff --git a/src/SRD/fix_srd.h b/src/SRD/fix_srd.h index fae9780b89..e14652e526 100644 --- a/src/SRD/fix_srd.h +++ b/src/SRD/fix_srd.h @@ -361,11 +361,11 @@ warning. E: Bad quadratic solve for particle/line collision -This is an internal error. It should nornally not occur. +This is an internal error. It should normally not occur. E: Bad quadratic solve for particle/tri collision -This is an internal error. It should nornally not occur. +This is an internal error. It should normally not occur. W: Fix srd particle moved outside valid domain @@ -377,7 +377,7 @@ Big particles must be extended spheriods or ellipsoids. E: Cannot use lines with fix srd unless overlap is set -This is because line segements are connected to each other. +This is because line segments are connected to each other. E: Cannot use tris with fix srd unless overlap is set diff --git a/src/angle.h b/src/angle.h index 119f206c36..8c8129bbbb 100644 --- a/src/angle.h +++ b/src/angle.h @@ -27,7 +27,7 @@ class Angle : protected Pointers { int *setflag; int writedata; // 1 if writes coeffs to data file double energy; // accumulated energies - double virial[6]; // accumlated virial + double virial[6]; // accumulated virial double *eatom,**vatom; // accumulated per-atom energy/virial // KOKKOS host/device flag and data masks diff --git a/src/bond.h b/src/bond.h index 06e05a7265..ffa1f5fb05 100644 --- a/src/bond.h +++ b/src/bond.h @@ -27,7 +27,7 @@ class Bond : protected Pointers { int *setflag; int writedata; // 1 if writes coeffs to data file double energy; // accumulated energies - double virial[6]; // accumlated virial + double virial[6]; // accumulated virial double *eatom,**vatom; // accumulated per-atom energy/virial // KOKKOS host/device flag and data masks diff --git a/src/citeme.h b/src/citeme.h index 80b642ab6d..18e9a712db 100644 --- a/src/citeme.h +++ b/src/citeme.h @@ -42,7 +42,7 @@ E: Cannot open log.cite file This file is created when you use some LAMMPS features, to indicate what paper you should cite on behalf of those who implemented -the feature. Check that you have write priveleges into the directory +the feature. Check that you have write privileges into the directory you are running in. */ diff --git a/src/dihedral.h b/src/dihedral.h index 68167eb86f..5f3909244f 100644 --- a/src/dihedral.h +++ b/src/dihedral.h @@ -27,7 +27,7 @@ class Dihedral : protected Pointers { int *setflag; int writedata; // 1 if writes coeffs to data file double energy; // accumulated energy - double virial[6]; // accumlated virial + double virial[6]; // accumulated virial double *eatom,**vatom; // accumulated per-atom energy/virial // KOKKOS host/device flag and data masks diff --git a/src/fix.h b/src/fix.h index bd3189afe7..8005da1add 100644 --- a/src/fix.h +++ b/src/fix.h @@ -89,7 +89,7 @@ class Fix : protected Pointers { int comm_reverse; // size of reverse communication (0 if none) int comm_border; // size of border communication (0 if none) - double virial[6]; // accumlated virial + double virial[6]; // accumulated virial double *eatom,**vatom; // accumulated per-atom energy/virial int restart_reset; // 1 if restart just re-initialized fix diff --git a/src/fix_ave_chunk.h b/src/fix_ave_chunk.h index 18622699de..eb51043e0f 100644 --- a/src/fix_ave_chunk.h +++ b/src/fix_ave_chunk.h @@ -162,7 +162,7 @@ Self-explanatory. E: Fix ave/chunk does not use chunk/atom compute -The specified conpute is not for a compute chunk/atom command. +The specified compute is not for a compute chunk/atom command. E: Error writing file header diff --git a/src/fix_langevin.h b/src/fix_langevin.h index 863c0f554c..34eec63987 100644 --- a/src/fix_langevin.h +++ b/src/fix_langevin.h @@ -132,7 +132,7 @@ One of the particles has radius 0.0. E: Fix langevin angmom requires extended particles -This fix option cannot be used with point paritlces. +This fix option cannot be used with point particles. E: Cannot zero Langevin force of 0 atoms diff --git a/src/improper.h b/src/improper.h index b20bc732df..be78b6acf9 100644 --- a/src/improper.h +++ b/src/improper.h @@ -27,7 +27,7 @@ class Improper : protected Pointers { int *setflag; int writedata; // 1 if writes coeffs to data file double energy; // accumulated energies - double virial[6]; // accumlated virial + double virial[6]; // accumulated virial double *eatom,**vatom; // accumulated per-atom energy/virial // KOKKOS host/device flag and data masks diff --git a/src/kspace.h b/src/kspace.h index 95fb6ffaf2..c514516194 100644 --- a/src/kspace.h +++ b/src/kspace.h @@ -33,7 +33,7 @@ class KSpace : protected Pointers { public: double energy; // accumulated energies double energy_1,energy_6; - double virial[6]; // accumlated virial + double virial[6]; // accumulated virial double *eatom,**vatom; // accumulated per-atom energy/virial double e2group; // accumulated group-group energy double f2group[3]; // accumulated group-group force diff --git a/src/procmap.cpp b/src/procmap.cpp index 088939b218..f54ac1915c 100644 --- a/src/procmap.cpp +++ b/src/procmap.cpp @@ -216,7 +216,7 @@ void ProcMap::numa_grid(int nprocs, int *user_procgrid, int *procgrid, best_factors(numapossible,numafactors,numagrid,1,1,1); - // user_nodegrid = implied user contraints on nodes + // user_nodegrid = implied user constraints on nodes int user_nodegrid[3]; user_nodegrid[0] = user_procgrid[0] / numagrid[0]; diff --git a/src/region_cylinder.h b/src/region_cylinder.h index bc5255b343..e065c7d3f1 100644 --- a/src/region_cylinder.h +++ b/src/region_cylinder.h @@ -78,6 +78,6 @@ Self-explanatory. E: Variable for region cylinder is invalid style -Only equal-style varaibles are allowed. +Only equal-style variables are allowed. */ diff --git a/src/region_sphere.h b/src/region_sphere.h index 9e1fb4e739..c003a91651 100644 --- a/src/region_sphere.h +++ b/src/region_sphere.h @@ -69,6 +69,6 @@ Self-explanatory. E: Variable for region sphere is invalid style -Only equal-style varaibles are allowed. +Only equal-style variables are allowed. */ diff --git a/src/thermo.h b/src/thermo.h index ddbe3cc95b..d6b3822efe 100644 --- a/src/thermo.h +++ b/src/thermo.h @@ -236,7 +236,7 @@ E: Lost atoms: original %ld current %ld Lost atoms are checked for each time thermo output is done. See the thermo_modify lost command for options. Lost atoms usually indicate bad dynamics, e.g. atoms have been blown far out of the simulation -box, or moved futher than one processor's sub-domain away before +box, or moved further than one processor's sub-domain away before reneighboring. W: Lost atoms: original %ld current %ld @@ -244,7 +244,7 @@ W: Lost atoms: original %ld current %ld Lost atoms are checked for each time thermo output is done. See the thermo_modify lost command for options. Lost atoms usually indicate bad dynamics, e.g. atoms have been blown far out of the simulation -box, or moved futher than one processor's sub-domain away before +box, or moved further than one processor's sub-domain away before reneighboring. E: Thermo style does not use temp diff --git a/tools/eff/cfg2lammps.py b/tools/eff/cfg2lammps.py index 1bf364aa93..49830dbb09 100644 --- a/tools/eff/cfg2lammps.py +++ b/tools/eff/cfg2lammps.py @@ -217,7 +217,7 @@ def generate_lammps_input(infile): if line.find("e_field_packet_duration")>=0: continue if line.find("set_limit")>=0: - continue # need to add this contraint + continue # need to add this constraint if line.find("set_limit_stiffness")>=0: continue if line.find("output_position")>=0: diff --git a/tools/i-pi/ipi/engine/initializer.py b/tools/i-pi/ipi/engine/initializer.py index 466677938a..de629c7f96 100644 --- a/tools/i-pi/ipi/engine/initializer.py +++ b/tools/i-pi/ipi/engine/initializer.py @@ -70,7 +70,7 @@ class InitBase(dobject): Args: value: A string which specifies what value to initialize the simulation property to. - mode: A string specifiying what style of initialization should be + mode: A string specifying what style of initialization should be used to read the data. units: A string giving which unit the value is in. """ @@ -97,7 +97,7 @@ class InitIndexed(InitBase): Args: value: A string which specifies what value to initialize the simulation property to. - mode: A string specifiying what style of initialization should be + mode: A string specifying what style of initialization should be used to read the data. units: A string giving which unit the value is in. index: Which atom to initialize the value of.