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8
doc/Manual.html
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>LAMMPS Documentation &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>LAMMPS Documentation &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="1. Introduction" href="Section_intro.html"/>
@ -135,7 +135,7 @@
<H1></H1><div class="section" id="lammps-documentation">
<h1>LAMMPS Documentation<a class="headerlink" href="#lammps-documentation" title="Permalink to this headline"></a></h1>
<div class="section" id="dec-2015-version">
<h2>15 Dec 2015 version<a class="headerlink" href="#dec-2015-version" title="Permalink to this headline"></a></h2>
<h2>17 Dec 2015 version<a class="headerlink" href="#dec-2015-version" title="Permalink to this headline"></a></h2>
</div>
<div class="section" id="version-info">
<h2>Version info:<a class="headerlink" href="#version-info" title="Permalink to this headline"></a></h2>
@ -422,7 +422,7 @@ it gives quick access to documentation for all LAMMPS commands.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

4
doc/Manual.txt
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@ -1,7 +1,7 @@
<!-- HTML_ONLY -->
<HEAD>
<TITLE>LAMMPS Users Manual</TITLE>
<META NAME="docnumber" CONTENT="15 Dec 2015 version">
<META NAME="docnumber" CONTENT="17 Dec 2015 version">
<META NAME="author" CONTENT="http://lammps.sandia.gov - Sandia National Laboratories">
<META NAME="copyright" CONTENT="Copyright (2003) Sandia Corporation. This software and manual is distributed under the GNU General Public License.">
</HEAD>
@ -21,7 +21,7 @@
<H1></H1>
LAMMPS Documentation :c,h3
15 Dec 2015 version :c,h4
17 Dec 2015 version :c,h4
Version info: :h4

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>5. Accelerating LAMMPS performance &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>5. Accelerating LAMMPS performance &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="6. How-to discussions" href="Section_howto.html"/>
<link rel="prev" title="4. Packages" href="Section_packages.html"/>
@ -608,7 +608,7 @@ to benchmark the performance of both packages on your system.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

22
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>3. Commands &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>3. Commands &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="4. Packages" href="Section_packages.html"/>
<link rel="prev" title="2. Getting Started" href="Section_start.html"/>
@ -612,7 +612,7 @@ g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t = OPT.</p>
<col width="12%" />
<col width="13%" />
<col width="10%" />
<col width="11%" />
<col width="12%" />
<col width="15%" />
<col width="12%" />
</colgroup>
@ -663,11 +663,11 @@ g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t = OPT.</p>
<td><a class="reference internal" href="fix_nph_asphere.html"><em>nph/asphere (o)</em></a></td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="fix_nph_sphere.html"><em>nph/sphere (o)</em></a></td>
<td><a class="reference internal" href="fix_nh.html"><em>npt (cko)</em></a></td>
<td><a class="reference internal" href="fix_nh.html"><em>npt (ckio)</em></a></td>
<td><a class="reference internal" href="fix_npt_asphere.html"><em>npt/asphere (o)</em></a></td>
<td><a class="reference internal" href="fix_npt_sphere.html"><em>npt/sphere (o)</em></a></td>
<td><a class="reference internal" href="fix_nve.html"><em>nve (cko)</em></a></td>
<td><a class="reference internal" href="fix_nve_asphere.html"><em>nve/asphere</em></a></td>
<td><a class="reference internal" href="fix_nve.html"><em>nve (ckio)</em></a></td>
<td><a class="reference internal" href="fix_nve_asphere.html"><em>nve/asphere (i)</em></a></td>
<td><a class="reference internal" href="fix_nve_asphere_noforce.html"><em>nve/asphere/noforce</em></a></td>
<td><a class="reference internal" href="fix_nve_body.html"><em>nve/body</em></a></td>
</tr>
@ -1029,10 +1029,10 @@ KOKKOS, o = USER-OMP, t = OPT.</p>
<tr class="row-even"><td><a class="reference internal" href="pair_born.html"><em>born/coul/wolf (go)</em></a></td>
<td><a class="reference internal" href="pair_brownian.html"><em>brownian (o)</em></a></td>
<td><a class="reference internal" href="pair_brownian.html"><em>brownian/poly (o)</em></a></td>
<td><a class="reference internal" href="pair_buck.html"><em>buck (cgko)</em></a></td>
<td><a class="reference internal" href="pair_buck.html"><em>buck (cgkio)</em></a></td>
</tr>
<tr class="row-odd"><td><a class="reference internal" href="pair_buck.html"><em>buck/coul/cut (cgko)</em></a></td>
<td><a class="reference internal" href="pair_buck.html"><em>buck/coul/long (cgko)</em></a></td>
<tr class="row-odd"><td><a class="reference internal" href="pair_buck.html"><em>buck/coul/cut (cgkio)</em></a></td>
<td><a class="reference internal" href="pair_buck.html"><em>buck/coul/long (cgkio)</em></a></td>
<td><a class="reference internal" href="pair_buck.html"><em>buck/coul/long/cs</em></a></td>
<td><a class="reference internal" href="pair_buck.html"><em>buck/coul/msm (o)</em></a></td>
</tr>
@ -1136,7 +1136,7 @@ KOKKOS, o = USER-OMP, t = OPT.</p>
<td><a class="reference internal" href="pair_sw.html"><em>sw (cgkio)</em></a></td>
<td><a class="reference internal" href="pair_table.html"><em>table (gko)</em></a></td>
</tr>
<tr class="row-even"><td><a class="reference internal" href="pair_tersoff.html"><em>tersoff (cgko)</em></a></td>
<tr class="row-even"><td><a class="reference internal" href="pair_tersoff.html"><em>tersoff (cgkio)</em></a></td>
<td><a class="reference internal" href="pair_tersoff_mod.html"><em>tersoff/mod (ko)</em></a></td>
<td><a class="reference internal" href="pair_tersoff_zbl.html"><em>tersoff/zbl (ko)</em></a></td>
<td><a class="reference internal" href="pair_coul.html"><em>tip4p/cut (o)</em></a></td>
@ -1502,7 +1502,7 @@ KOKKOS, o = USER-OMP, t = OPT.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

14
doc/Section_commands.txt
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@ -522,11 +522,11 @@ g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t = OPT.
"nphug (o)"_fix_nphug.html,
"nph/asphere (o)"_fix_nph_asphere.html,
"nph/sphere (o)"_fix_nph_sphere.html,
"npt (cko)"_fix_nh.html,
"npt (ckio)"_fix_nh.html,
"npt/asphere (o)"_fix_npt_asphere.html,
"npt/sphere (o)"_fix_npt_sphere.html,
"nve (cko)"_fix_nve.html,
"nve/asphere"_fix_nve_asphere.html,
"nve (ckio)"_fix_nve.html,
"nve/asphere (i)"_fix_nve_asphere.html,
"nve/asphere/noforce"_fix_nve_asphere_noforce.html,
"nve/body"_fix_nve_body.html,
"nve/limit"_fix_nve_limit.html,
@ -799,9 +799,9 @@ KOKKOS, o = USER-OMP, t = OPT.
"born/coul/wolf (go)"_pair_born.html,
"brownian (o)"_pair_brownian.html,
"brownian/poly (o)"_pair_brownian.html,
"buck (cgko)"_pair_buck.html,
"buck/coul/cut (cgko)"_pair_buck.html,
"buck/coul/long (cgko)"_pair_buck.html,
"buck (cgkio)"_pair_buck.html,
"buck/coul/cut (cgkio)"_pair_buck.html,
"buck/coul/long (cgkio)"_pair_buck.html,
"buck/coul/long/cs"_pair_buck.html,
"buck/coul/msm (o)"_pair_buck.html,
"buck/long/coul/long (o)"_pair_buck_long.html,
@ -884,7 +884,7 @@ KOKKOS, o = USER-OMP, t = OPT.
"soft (go)"_pair_soft.html,
"sw (cgkio)"_pair_sw.html,
"table (gko)"_pair_table.html,
"tersoff (cgko)"_pair_tersoff.html,
"tersoff (cgkio)"_pair_tersoff.html,
"tersoff/mod (ko)"_pair_tersoff_mod.html,
"tersoff/zbl (ko)"_pair_tersoff_zbl.html,
"tip4p/cut (o)"_pair_coul.html,

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>12. Errors &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>12. Errors &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="13. Future and history" href="Section_history.html"/>
<link rel="prev" title="11. Python interface to LAMMPS" href="Section_python.html"/>
@ -6344,7 +6344,7 @@ infinity.</dd>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>7. Example problems &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>7. Example problems &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="8. Performance &amp; scalability" href="Section_perf.html"/>
<link rel="prev" title="6. How-to discussions" href="Section_howto.html"/>
@ -367,7 +367,7 @@ packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>13. Future and history &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>13. Future and history &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="prev" title="12. Errors" href="Section_errors.html"/>
@ -279,7 +279,7 @@ internally. A brief listing of their features is given here.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
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COLLAPSE_INDEX:false,
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18
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>6. How-to discussions &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>6. How-to discussions &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="7. Example problems" href="Section_example.html"/>
<link rel="prev" title="5. Accelerating LAMMPS performance" href="Section_accelerate.html"/>
@ -363,8 +363,8 @@ commands like <a class="reference internal" href="pair_coeff.html"><em>pair_coef
<a class="reference internal" href="bond_coeff.html"><em>bond_coeff</em></a>. See <a class="reference internal" href="Section_tools.html"><em>Section_tools</em></a>
for additional tools that can use CHARMM or AMBER to assign force
field coefficients and convert their output into LAMMPS input.</p>
<p>See <a class="reference internal" href="pair_charmm.html#mackerell"><span>(MacKerell)</span></a> for a description of the CHARMM force
field. See <a class="reference internal" href="dihedral_charmm.html#cornell"><span>(Cornell)</span></a> for a description of the AMBER force
<p>See <a class="reference internal" href="special_bonds.html#mackerell"><span>(MacKerell)</span></a> for a description of the CHARMM force
field. See <a class="reference internal" href="special_bonds.html#cornell"><span>(Cornell)</span></a> for a description of the AMBER force
field.</p>
<p>These style choices compute force field formulas that are consistent
with common options in CHARMM or AMBER. See each command&#8217;s
@ -389,7 +389,7 @@ atoms involved in the bond, angle, or torsion terms. DREIDING has an
<a class="reference internal" href="pair_hbond_dreiding.html"><em>explicit hydrogen bond term</em></a> to describe
interactions involving a hydrogen atom on very electronegative atoms
(N, O, F).</p>
<p>See <a class="reference internal" href="pair_hbond_dreiding.html#mayo"><span>(Mayo)</span></a> for a description of the DREIDING force field</p>
<p>See <a class="reference internal" href="special_bonds.html#mayo"><span>(Mayo)</span></a> for a description of the DREIDING force field</p>
<p>These style choices compute force field formulas that are consistent
with the DREIDING force field. See each command&#8217;s
documentation for the formula it computes.</p>
@ -587,7 +587,7 @@ computations between frozen atoms by using this command:</p>
<div class="section" id="tip3p-water-model">
<span id="howto-7"></span><h2>6.7. TIP3P water model<a class="headerlink" href="#tip3p-water-model" title="Permalink to this headline"></a></h2>
<p>The TIP3P water model as implemented in CHARMM
<a class="reference internal" href="pair_charmm.html#mackerell"><span>(MacKerell)</span></a> specifies a 3-site rigid water molecule with
<a class="reference internal" href="special_bonds.html#mackerell"><span>(MacKerell)</span></a> specifies a 3-site rigid water molecule with
charges and Lennard-Jones parameters assigned to each of the 3 atoms.
In LAMMPS the <a class="reference internal" href="fix_shake.html"><em>fix shake</em></a> command can be used to hold
the two O-H bonds and the H-O-H angle rigid. A bond style of
@ -766,7 +766,7 @@ the partial charge assignemnts change:</p>
<div class="line">H charge = 0.4238</div>
<div class="line"><br /></div>
</div>
<p>See the <a class="reference internal" href="#berendsen"><span>(Berendsen)</span></a> reference for more details on both
<p>See the <a class="reference internal" href="fix_temp_berendsen.html#berendsen"><span>(Berendsen)</span></a> reference for more details on both
the SPC and SPC/E models.</p>
<p>Wikipedia also has a nice article on <a class="reference external" href="http://en.wikipedia.org/wiki/Water_model">water models</a>.</p>
<hr class="docutils" />
@ -2749,7 +2749,7 @@ fix ave_chunk all ave/time 10 1 10 c_cstherm file chunk.dump mode vector
model, representes induced dipoles by a pair of charges (the core atom
and the Drude particle) connected by a harmonic spring. The Drude
model has a number of features aimed at its use in molecular systems
(<a class="reference internal" href="#lamoureux"><span>Lamoureux and Roux</span></a>):</p>
(<a class="reference internal" href="tutorial_drude.html#lamoureux"><span>Lamoureux and Roux</span></a>):</p>
<ul class="simple">
<li>Thermostating of the additional degrees of freedom associated with the
induced dipoles at very low temperature, in terms of the reduced
@ -2856,7 +2856,7 @@ Phys, 79, 926 (1983).</p>
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>1. Introduction &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>1. Introduction &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="2. Getting Started" href="Section_start.html"/>
<link rel="prev" title="LAMMPS Documentation" href="Manual.html"/>
@ -661,7 +661,7 @@ version of LAMMPS were the following:</p>
<script type="text/javascript">
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6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>10. Modifying &amp; extending LAMMPS &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>10. Modifying &amp; extending LAMMPS &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="11. Python interface to LAMMPS" href="Section_python.html"/>
<link rel="prev" title="9. Additional tools" href="Section_tools.html"/>
@ -1220,7 +1220,7 @@ feature.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
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VERSION:'15 Dec 2015',
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FILE_SUFFIX:'.html',
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6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>4. Packages &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>4. Packages &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="5. Accelerating LAMMPS performance" href="Section_accelerate.html"/>
<link rel="prev" title="3. Commands" href="Section_commands.html"/>
@ -1557,7 +1557,7 @@ you have questions.</p>
<script type="text/javascript">
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6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>8. Performance &amp; scalability &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>8. Performance &amp; scalability &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="9. Additional tools" href="Section_tools.html"/>
<link rel="prev" title="7. Example problems" href="Section_example.html"/>
@ -270,7 +270,7 @@ on 1500 processors that ran at 85% parallel efficiency.</p>
<script type="text/javascript">
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6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>11. Python interface to LAMMPS &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>11. Python interface to LAMMPS &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="12. Errors" href="Section_errors.html"/>
<link rel="prev" title="10. Modifying &amp; extending LAMMPS" href="Section_modify.html"/>
@ -1016,7 +1016,7 @@ different visualization package options. Click to see larger images:</p>
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>2. Getting Started &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>2. Getting Started &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="3. Commands" href="Section_commands.html"/>
<link rel="prev" title="1. Introduction" href="Section_intro.html"/>
@ -1955,7 +1955,7 @@ close if you have setup the problem for both codes the same.</p>
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>9. Additional tools &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>9. Additional tools &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<link rel="next" title="10. Modifying &amp; extending LAMMPS" href="Section_modify.html"/>
<link rel="prev" title="8. Performance &amp; scalability" href="Section_perf.html"/>
@ -673,7 +673,7 @@ distributing his great tool!</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>5.USER-CUDA package &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>5.USER-CUDA package &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -338,7 +338,7 @@ occurs, the faster your simulation will run.</li>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>5.GPU package &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>5.GPU package &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -367,7 +367,7 @@ storage by a single MPI process.</li>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>5.USER-INTEL package &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>5.USER-INTEL package &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -428,7 +428,7 @@ supported.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>5.KOKKOS package &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>5.KOKKOS package &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -586,7 +586,7 @@ change in the future.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>5.USER-OMP package &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>5.USER-OMP package &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -303,7 +303,7 @@ MPI tasks to a (multi-core) socket, should solve this issue.</li>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
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HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>5.OPT package &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>5.OPT package &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -205,7 +205,7 @@ of a run. On most machines for reasonable problem sizes, it will be a
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
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FILE_SUFFIX:'.html',
HAS_SOURCE: true

8
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style charmm command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style charmm command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -152,7 +152,7 @@ angle_coeff 1 300.0 107.0 50.0 3.0
<p>with an additional Urey_Bradley term based on the distance <em>r</em> between
the 1st and 3rd atoms in the angle. K, theta0, Kub, and Rub are
coefficients defined for each angle type.</p>
<p>See <a class="reference internal" href="pair_charmm.html#mackerell"><span>(MacKerell)</span></a> for a description of the CHARMM force
<p>See <a class="reference internal" href="special_bonds.html#mackerell"><span>(MacKerell)</span></a> for a description of the CHARMM force
field.</p>
<p>The following coefficients must be defined for each angle type via the
<a class="reference internal" href="angle_coeff.html"><em>angle_coeff</em></a> command as in the example above, or in
@ -230,7 +230,7 @@ Fischer, Gao, Guo, Ha, et al, J Phys Chem, 102, 3586 (1998).</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

8
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style class2 command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style class2 command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -151,7 +151,7 @@ angle_coeff * ba 3.6551 24.895 1.0119 1.5228
<p>where Ea is the angle term, Ebb is a bond-bond term, and Eba is a
bond-angle term. Theta0 is the equilibrium angle and r1 and r2 are
the equilibrium bond lengths.</p>
<p>See <a class="reference internal" href="pair_class2.html#sun"><span>(Sun)</span></a> for a description of the COMPASS class2 force field.</p>
<p>See <a class="reference internal" href="pair_modify.html#sun"><span>(Sun)</span></a> for a description of the COMPASS class2 force field.</p>
<p>Coefficients for the Ea, Ebb, and Eba formulas must be defined for
each angle type via the <a class="reference internal" href="angle_coeff.html"><em>angle_coeff</em></a> command as in
the example above, or in the data file or restart files read by the
@ -257,7 +257,7 @@ for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_coeff command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_coeff command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -245,7 +245,7 @@ set, either in the input script or in a data file.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style cosine command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style cosine command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -215,7 +215,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style cosine/delta command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style cosine/delta command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -219,7 +219,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

8
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style cosine/periodic command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style cosine/periodic command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -151,7 +151,7 @@ used for an octahedral complex and <em>n</em> = 3 might be used for a
trigonal center:</p>
<img alt="_images/angle_cosine_periodic.jpg" class="align-center" src="_images/angle_cosine_periodic.jpg" />
<p>where C, B and n are coefficients defined for each angle type.</p>
<p>See <a class="reference internal" href="pair_hbond_dreiding.html#mayo"><span>(Mayo)</span></a> for a description of the DREIDING force field</p>
<p>See <a class="reference internal" href="special_bonds.html#mayo"><span>(Mayo)</span></a> for a description of the DREIDING force field</p>
<p>The following coefficients must be defined for each angle type via the
<a class="reference internal" href="angle_coeff.html"><em>angle_coeff</em></a> command as in the example above, or in
the data file or restart files read by the <a class="reference internal" href="read_data.html"><em>read_data</em></a>
@ -229,7 +229,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style cosine/shift command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style cosine/shift command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -220,7 +220,7 @@ section for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style cosine/shift/exp command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style cosine/shift/exp command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -231,7 +231,7 @@ section for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style cosine/squared command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style cosine/squared command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -219,7 +219,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style dipole command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style dipole command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -258,7 +258,7 @@ Clarendon Press, Oxford, 1987.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style fourier command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style fourier command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -216,7 +216,7 @@ section for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style fourier/simple command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style fourier/simple command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -215,7 +215,7 @@ section for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style harmonic command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style harmonic command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -224,7 +224,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style hybrid command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style hybrid command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -240,7 +240,7 @@ file, you need to re-specify angle_coeff commands.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style none command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style none command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -184,7 +184,7 @@ if triplets of angle atoms were listed in the data file read by the
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style quartic command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style quartic command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -222,7 +222,7 @@ section for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style sdk command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style sdk command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -208,7 +208,7 @@ USER-CG-CMM package. See the <a class="reference internal" href="Section_start.
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -243,7 +243,7 @@ package.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>angle_style table command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>angle_style table command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -293,7 +293,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>atom_modify command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>atom_modify command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -309,7 +309,7 @@ cutoff will be used to set the bin size.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>atom_style command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>atom_style command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -448,7 +448,7 @@ only enabled if LAMMPS was built with that package. See the <a class="reference
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>balance command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>balance command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -508,7 +508,7 @@ appear in <em>dimstr</em> for the <em>shift</em> style.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

8
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Body particles &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>Body particles &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -305,7 +305,7 @@ The <em>bflag2</em> argument is ignored.</p>
<p>The <em>rounded/polygon</em> body style represents body particles as a convex
polygon with a variable number N &gt; 2 of vertices, which can only be
used for 2d models. One example use of this body style is for 2d
discrete element models, as described in <a class="reference internal" href="#fraige"><span>Fraige</span></a>. Similar to
discrete element models, as described in <a class="reference internal" href="pair_body_rounded_polygon.html#fraige"><span>Fraige</span></a>. Similar to
body style <em>nparticle</em>, the atom_style body command for this body
style takes two additional arguments:</p>
<div class="highlight-python"><div class="highlight"><pre>atom_style body rounded/polygon Nmin Nmax
@ -418,7 +418,7 @@ Particuology, 6, 455 (2008).</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

8
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style class2 command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style class2 command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -147,7 +147,7 @@ bond_coeff 1 1.0 100.0 80.0 80.0
<p>The <em>class2</em> bond style uses the potential</p>
<img alt="_images/bond_class2.jpg" class="align-center" src="_images/bond_class2.jpg" />
<p>where r0 is the equilibrium bond distance.</p>
<p>See <a class="reference internal" href="pair_class2.html#sun"><span>(Sun)</span></a> for a description of the COMPASS class2 force field.</p>
<p>See <a class="reference internal" href="pair_modify.html#sun"><span>(Sun)</span></a> for a description of the COMPASS class2 force field.</p>
<p>The following coefficients must be defined for each bond type via the
<a class="reference internal" href="bond_coeff.html"><em>bond_coeff</em></a> command as in the example above, or in
the data file or restart files read by the <a class="reference internal" href="read_data.html"><em>read_data</em></a>
@ -222,7 +222,7 @@ for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_coeff command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_coeff command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -242,7 +242,7 @@ either in the input script or in a data file.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

8
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style fene command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style fene command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -150,7 +150,7 @@ bond_coeff 1 30.0 1.5 1.0 1.0
<p>The <em>fene</em> bond style uses the potential</p>
<img alt="_images/bond_fene.jpg" class="align-center" src="_images/bond_fene.jpg" />
<p>to define a finite extensible nonlinear elastic (FENE) potential
<a class="reference internal" href="bond_fene_expand.html#kremer"><span>(Kremer)</span></a>, used for bead-spring polymer models. The first
<a class="reference internal" href="special_bonds.html#kremer"><span>(Kremer)</span></a>, used for bead-spring polymer models. The first
term is attractive, the 2nd Lennard-Jones term is repulsive. The
first term extends to R0, the maximum extent of the bond. The 2nd
term is cutoff at 2^(1/6) sigma, the minimum of the LJ potential.</p>
@ -230,7 +230,7 @@ style. LAMMPS will issue a warning it that&#8217;s not the case.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

8
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style fene/expand command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style fene/expand command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -147,7 +147,7 @@ bond_coeff 1 30.0 1.5 1.0 1.0 0.5
<p>The <em>fene/expand</em> bond style uses the potential</p>
<img alt="_images/bond_fene_expand.jpg" class="align-center" src="_images/bond_fene_expand.jpg" />
<p>to define a finite extensible nonlinear elastic (FENE) potential
<a class="reference internal" href="#kremer"><span>(Kremer)</span></a>, used for bead-spring polymer models. The first
<a class="reference internal" href="special_bonds.html#kremer"><span>(Kremer)</span></a>, used for bead-spring polymer models. The first
term is attractive, the 2nd Lennard-Jones term is repulsive.</p>
<p>The <em>fene/expand</em> bond style is similar to <em>fene</em> except that an extra
shift factor of delta (positive or negative) is added to <em>r</em> to
@ -231,7 +231,7 @@ style. LAMMPS will issue a warning it that&#8217;s not the case.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style harmonic command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style harmonic command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -220,7 +220,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style harmonic/shift command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style harmonic/shift command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -222,7 +222,7 @@ section for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
doc/bond_harmonic_shift_cut.html
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style harmonic/shift/cut command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style harmonic/shift/cut command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -223,7 +223,7 @@ section for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style hybrid command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style hybrid command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -223,7 +223,7 @@ file, you need to re-specify bond_coeff commands.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style morse command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style morse command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -218,7 +218,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style none command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style none command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -184,7 +184,7 @@ pairs of bonded atoms were listed in the data file read by the
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style nonlinear command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style nonlinear command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -220,7 +220,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style quartic command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style quartic command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -252,7 +252,7 @@ dihedral, etc) cannot be used with <em>quartic</em> bonds.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -251,7 +251,7 @@ package.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>bond_style table command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>bond_style table command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -290,7 +290,7 @@ MOLECULE package (which it is by default). See the <a class="reference internal
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>boundary command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>boundary command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -248,7 +248,7 @@ of lost atoms.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>box command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>box command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -212,7 +212,7 @@ error.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>change_box command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>change_box command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -466,7 +466,7 @@ change_box command is issued, so long as an <a class="reference internal" href="
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>clear command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>clear command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -192,7 +192,7 @@ input script variables (<a class="reference internal" href="variable.html"><em>v
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>comm_modify command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>comm_modify command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -307,7 +307,7 @@ cutoff = pairwise force cutoff + neighbor skin.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>comm_style command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>comm_style command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -217,7 +217,7 @@ commands. The decomposition can be changed via the
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -395,7 +395,7 @@ section of <a class="reference internal" href="Section_commands.html#cmd-5"><spa
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute ackland/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute ackland/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -218,7 +218,7 @@ integers defined above.</p>
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute angle/local command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute angle/local command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -226,7 +226,7 @@ be in energy <a class="reference internal" href="units.html"><em>units</em></a>.
<script type="text/javascript">
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HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute angmom/chunk command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute angmom/chunk command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -236,7 +236,7 @@ mass-velocity-distance <a class="reference internal" href="units.html"><em>units
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute basal/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute basal/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -216,7 +216,7 @@ well-defined basal plane.</p>
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute body/local command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute body/local command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -241,7 +241,7 @@ options.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute bond/local command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute bond/local command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -234,7 +234,7 @@ output for <em>eng</em> will be in energy <a class="reference internal" href="un
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute centro/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute centro/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -263,7 +263,7 @@ of 12.</p>
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute chunk/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute chunk/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -719,7 +719,7 @@ the restarted simulation begins.</p>
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute cluster/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute cluster/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -226,7 +226,7 @@ LAMMPS output options.</p>
<script type="text/javascript">
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FILE_SUFFIX:'.html',
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute cna/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute cna/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -238,7 +238,7 @@ above.</p>
<script type="text/javascript">
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URL_ROOT:'./',
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FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute com command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute com command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -210,7 +210,7 @@ distance <a class="reference internal" href="units.html"><em>units</em></a>.</p>
<script type="text/javascript">
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6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute com/chunk command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute com/chunk command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -234,7 +234,7 @@ distance <a class="reference internal" href="units.html"><em>units</em></a>.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
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FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute contact/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute contact/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -203,7 +203,7 @@ above.</p>
<script type="text/javascript">
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URL_ROOT:'./',
VERSION:'15 Dec 2015',
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FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute coord/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute coord/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -242,7 +242,7 @@ explained above.</p>
<script type="text/javascript">
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FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute damage/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute damage/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -206,7 +206,7 @@ LAMMPS was built with that package. See the <a class="reference internal" href=
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
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FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute dihedral/local command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute dihedral/local command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -219,7 +219,7 @@ options.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
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FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute dilatation/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute dilatation/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -208,7 +208,7 @@ LAMMPS was built with that package. See the <a class="reference internal" href=
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute displace/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute displace/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -222,7 +222,7 @@ options.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
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COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute erotate/asphere command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute erotate/asphere command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -216,7 +216,7 @@ particles.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
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COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute erotate/rigid command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute erotate/rigid command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -208,7 +208,7 @@ LAMMPS was built with that package. See the <a class="reference internal" href=
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
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VERSION:'17 Dec 2015',
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FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute erotate/sphere command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute erotate/sphere command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -208,7 +208,7 @@ contribute to the rotational energy.</p>
<script type="text/javascript">
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URL_ROOT:'./',
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute erotate/sphere/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute erotate/sphere/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -207,7 +207,7 @@ LAMMPS output options.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
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FILE_SUFFIX:'.html',
HAS_SOURCE: true

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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute event/displace command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute event/displace command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -214,7 +214,7 @@ for more info on packages.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute fep command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute fep command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -413,7 +413,7 @@ Liquids, Oxford University Press (1987)</p>
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute group/group command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute group/group command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -261,7 +261,7 @@ The <em>ewald</em> and <em>pppm</em> styles do.</p>
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute gyration command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute gyration command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -222,7 +222,7 @@ distance^2 <a class="reference internal" href="units.html"><em>units</em></a> re
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute gyration/chunk command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute gyration/chunk command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -253,7 +253,7 @@ represented by the formula above.</p>
<script type="text/javascript">
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute heat/flux command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute heat/flux command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -336,7 +336,7 @@ print &quot;average conductivity: $k[W/mK] @ $T K, ${ndens} /A^3&quot;
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
doc/compute_hexorder_atom.html
View File

@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute hexorder/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute hexorder/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -262,7 +262,7 @@ options.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
doc/compute_improper_local.html
View File

@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute improper/local command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute improper/local command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -219,7 +219,7 @@ options.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
doc/compute_inertia_chunk.html
View File

@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute inertia/chunk command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute inertia/chunk command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -235,7 +235,7 @@ mass*distance^2 <a class="reference internal" href="units.html"><em>units</em></
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
doc/compute_ke.html
View File

@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute ke command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute ke command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -211,7 +211,7 @@ scalar value will be in energy <a class="reference internal" href="units.html"><
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
doc/compute_ke_atom.html
View File

@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute ke/atom command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute ke/atom command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -200,7 +200,7 @@ LAMMPS output options.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

6
doc/compute_ke_atom_eff.html
View File

@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>compute ke/atom/eff command &mdash; LAMMPS 15 Dec 2015 documentation</title>
<title>compute ke/atom/eff command &mdash; LAMMPS 17 Dec 2015 documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 Dec 2015 documentation" href="index.html"/>
<link rel="top" title="LAMMPS 17 Dec 2015 documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -225,7 +225,7 @@ LAMMPS was built with that package. See the <a class="reference internal" href=
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 Dec 2015',
VERSION:'17 Dec 2015',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true

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