lj/smooth/gpu
This commit is contained in:
184
lib/gpu/lal_lj_smooth.cpp
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184
lib/gpu/lal_lj_smooth.cpp
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@ -0,0 +1,184 @@
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/***************************************************************************
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lj_smooth.cpp
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-------------------
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W. Michael Brown (ORNL)
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Class for acceleration of the lj/smooth pair style.
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__________________________________________________________________________
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This file is part of the LAMMPS Accelerator Library (LAMMPS_AL)
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__________________________________________________________________________
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begin :
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email : brownw@ornl.gov
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***************************************************************************/
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#if defined(USE_OPENCL)
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#include "lj_smooth_cl.h"
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#elif defined(USE_CUDART)
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const char *lj=0;
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#else
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#include "lj_smooth_cubin.h"
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#endif
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#include "lal_lj_smooth.h"
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#include <cassert>
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namespace LAMMPS_AL {
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#define LJSMOOTHT LJSMOOTH<numtyp, acctyp>
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extern Device<PRECISION,ACC_PRECISION> device;
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template <class numtyp, class acctyp>
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LJSMOOTHT::LJSMOOTH() : BaseAtomic<numtyp,acctyp>(), _allocated(false) {
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}
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template <class numtyp, class acctyp>
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LJSMOOTHT::~LJSMOOTH() {
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clear();
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}
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template <class numtyp, class acctyp>
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int LJSMOOTHT::bytes_per_atom(const int max_nbors) const {
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return this->bytes_per_atom_atomic(max_nbors);
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}
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template <class numtyp, class acctyp>
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int LJSMOOTHT::init(const int ntypes,
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double **host_cutsq, double **host_lj1,
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double **host_lj2, double **host_lj3,
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double **host_lj4, double **host_offset,
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double *host_special_lj, const int nlocal,
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const int nall, const int max_nbors,
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const int maxspecial, const double cell_size,
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const double gpu_split, FILE *_screen,
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double **host_ljsw1, double **host_ljsw2, double **host_ljsw3,
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double **host_ljsw4,
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double **cut_inner, double **cut_inner_sq) {
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int success;
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success=this->init_atomic(nlocal,nall,max_nbors,maxspecial,cell_size,gpu_split,
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_screen,lj_smooth,"k_lj_smooth");
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if (success!=0)
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return success;
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// If atom type constants fit in shared memory use fast kernel
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int lj_types=ntypes;
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shared_types=false;
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int max_shared_types=this->device->max_shared_types();
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if (lj_types<=max_shared_types && this->_block_size>=max_shared_types) {
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lj_types=max_shared_types;
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shared_types=true;
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}
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_lj_types=lj_types;
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// Allocate a host write buffer for data initialization
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UCL_H_Vec<numtyp> host_write(lj_types*lj_types*32,*(this->ucl_device),
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UCL_WRITE_ONLY);
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for (int i=0; i<lj_types*lj_types; i++)
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host_write[i]=0.0;
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lj1.alloc(lj_types*lj_types,*(this->ucl_device),UCL_READ_ONLY);
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this->atom->type_pack4(ntypes,lj_types,lj1,host_write,host_lj1,host_lj2,
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host_cutsq, cut_inner_sq);
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lj3.alloc(lj_types*lj_types,*(this->ucl_device),UCL_READ_ONLY);
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this->atom->type_pack4(ntypes,lj_types,lj3,host_write,host_lj3,host_lj4,
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host_offset, cut_inner);
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ljsw.alloc(lj_types*lj_types,*(this->ucl_device),UCL_READ_ONLY);
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this->atom->type_pack4(ntypes,lj_types,ljsw,host_write,host_ljsw1,host_ljsw2,
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host_ljsw3,host_ljsw4);
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UCL_H_Vec<double> dview;
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sp_lj.alloc(4,*(this->ucl_device),UCL_READ_ONLY);
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dview.view(host_special_lj,4,*(this->ucl_device));
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ucl_copy(sp_lj,dview,false);
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_allocated=true;
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this->_max_bytes=lj1.row_bytes()+lj3.row_bytes()+ljsw.row_bytes()+sp_lj.row_bytes();
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return 0;
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}
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template <class numtyp, class acctyp>
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void LJSMOOTHT::reinit(const int ntypes, double **host_cutsq, double **host_lj1,
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double **host_lj2, double **host_lj3,
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double **host_lj4, double **host_offset,
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double **host_ljsw1, double **host_ljsw2, double **host_ljsw3,
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double **host_ljsw4,
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double **cut_inner, double **cut_inner_sq) {
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// Allocate a host write buffer for data initialization
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UCL_H_Vec<numtyp> host_write(_lj_types*_lj_types*32,*(this->ucl_device),
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UCL_WRITE_ONLY);
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for (int i=0; i<_lj_types*_lj_types; i++)
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host_write[i]=0.0;
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this->atom->type_pack4(ntypes,_lj_types,lj1,host_write,host_lj1,host_lj2,
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host_cutsq, cut_inner_sq);
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this->atom->type_pack4(ntypes,_lj_types,lj3,host_write,host_lj3,host_lj4,
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host_offset, cut_inner);
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this->atom->type_pack4(ntypes,_lj_types,ljsw,host_write,host_ljsw1,host_ljsw2,
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host_ljsw3,host_ljsw4);
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}
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template <class numtyp, class acctyp>
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void LJSMOOTHT::clear() {
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if (!_allocated)
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return;
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_allocated=false;
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lj1.clear();
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lj3.clear();
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ljsw.clear();
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sp_lj.clear();
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this->clear_atomic();
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}
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template <class numtyp, class acctyp>
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double LJSMOOTHT::host_memory_usage() const {
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return this->host_memory_usage_atomic()+sizeof(LJSMOOTH<numtyp,acctyp>);
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}
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// ---------------------------------------------------------------------------
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// Calculate energies, forces, and torques
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// ---------------------------------------------------------------------------
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template <class numtyp, class acctyp>
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void LJSMOOTHT::loop(const bool _eflag, const bool _vflag) {
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// Compute the block size and grid size to keep all cores busy
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const int BX=this->block_size();
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int eflag, vflag;
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if (_eflag)
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eflag=1;
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else
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eflag=0;
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if (_vflag)
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vflag=1;
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else
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vflag=0;
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int GX=static_cast<int>(ceil(static_cast<double>(this->ans->inum())/
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(BX/this->_threads_per_atom)));
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int ainum=this->ans->inum();
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int nbor_pitch=this->nbor->nbor_pitch();
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this->time_pair.start();
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if (shared_types) {
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this->k_pair_fast.set_size(GX,BX);
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this->k_pair_fast.run(&this->atom->x, &lj1, &lj3, &ljsw, &sp_lj,
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&this->nbor->dev_nbor, &this->_nbor_data->begin(),
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&this->ans->force, &this->ans->engv, &eflag,
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&vflag, &ainum, &nbor_pitch,
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&this->_threads_per_atom);
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} else {
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this->k_pair.set_size(GX,BX);
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this->k_pair.run(&this->atom->x, &lj1, &lj3, &ljsw, &_lj_types, &sp_lj,
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&this->nbor->dev_nbor, &this->_nbor_data->begin(),
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&this->ans->force, &this->ans->engv, &eflag, &vflag,
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&ainum, &nbor_pitch, &this->_threads_per_atom);
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}
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this->time_pair.stop();
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}
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template class LJSMOOTH<PRECISION,ACC_PRECISION>;
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}
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92
lib/gpu/lal_lj_smooth.h
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92
lib/gpu/lal_lj_smooth.h
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@ -0,0 +1,92 @@
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/***************************************************************************
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lj_smooth.h
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-------------------
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W. Michael Brown (ORNL)
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Class for acceleration of the lj/smooth pair style.
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__________________________________________________________________________
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This file is part of the LAMMPS Accelerator Library (LAMMPS_AL)
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__________________________________________________________________________
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begin :
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email : brownw@ornl.gov
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***************************************************************************/
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#ifndef LAL_LJ_SMOOTH_H
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#define LAL_LJ_SMOOTH_H
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#include "lal_base_atomic.h"
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namespace LAMMPS_AL {
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template <class numtyp, class acctyp>
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class LJSMOOTH : public BaseAtomic<numtyp, acctyp> {
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public:
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LJSMOOTH();
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~LJSMOOTH();
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/// Clear any previous data and set up for a new LAMMPS run
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/** \param max_nbors initial number of rows in the neighbor matrix
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* \param cell_size cutoff + skin
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* \param gpu_split fraction of particles handled by device
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*
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* Returns:
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* - 0 if successful
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* - -1 if fix gpu not found
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* - -3 if there is an out of memory error
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* - -4 if the GPU library was not compiled for GPU
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* - -5 Double precision is not supported on card **/
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int init(const int ntypes, double **host_cutsq,
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double **host_lj1, double **host_lj2, double **host_lj3,
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double **host_lj4, double **host_offset, double *host_special_lj,
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const int nlocal, const int nall, const int max_nbors,
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const int maxspecial, const double cell_size,
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const double gpu_split, FILE *screen,
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double **host_ljsw1, double **host_ljsw2, double **host_ljsw3,
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double **host_ljsw4,
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double **cut_inner, double **cut_inner_sq);
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/// Send updated coeffs from host to device (to be compatible with fix adapt)
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void reinit(const int ntypes, double **host_cutsq,
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double **host_lj1, double **host_lj2, double **host_lj3,
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double **host_lj4, double **host_offset,
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double **host_ljsw1, double **host_ljsw2, double **host_ljsw3,
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double **host_ljsw4,
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double **cut_inner, double **cut_inner_sq);
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/// Clear all host and device data
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/** \note This is called at the beginning of the init() routine **/
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void clear();
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/// Returns memory usage on device per atom
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int bytes_per_atom(const int max_nbors) const;
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/// Total host memory used by library for pair style
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double host_memory_usage() const;
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// --------------------------- TYPE DATA --------------------------
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/// lj1.x = lj1, lj1.y = lj2, lj1.z = cutsq, lj1.w = cut_inner_sq
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UCL_D_Vec<numtyp4> lj1;
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/// lj3.x = lj3, lj3.y = lj4, lj3.z = offset, lj3.w = cut_inner
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UCL_D_Vec<numtyp4> lj3;
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/// ljsw.x = ljsw1, ljsw.y = ljsw2, ljsw.z = ljsw3, ljsw.w = ljsw4
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UCL_D_Vec<numtyp4> ljsw;
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/// Special LJ values
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UCL_D_Vec<numtyp> sp_lj;
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/// If atom type constants fit in shared memory, use fast kernels
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bool shared_types;
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/// Number of atom types
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int _lj_types;
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private:
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bool _allocated;
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void loop(const bool _eflag, const bool _vflag);
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};
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}
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#endif
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146
lib/gpu/lal_lj_smooth_ext.cpp
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146
lib/gpu/lal_lj_smooth_ext.cpp
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@ -0,0 +1,146 @@
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/***************************************************************************
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lj_smooth_ext.cpp
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-------------------
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W. Michael Brown (ORNL)
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Functions for LAMMPS access to lj/smooth acceleration routines.
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__________________________________________________________________________
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This file is part of the LAMMPS Accelerator Library (LAMMPS_AL)
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__________________________________________________________________________
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begin :
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email : brownw@ornl.gov
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***************************************************************************/
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#include <iostream>
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#include <cassert>
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#include <cmath>
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#include "lal_lj_smooth.h"
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using namespace std;
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using namespace LAMMPS_AL;
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static LJSMOOTH<PRECISION,ACC_PRECISION> LJSMTMF;
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// ---------------------------------------------------------------------------
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// Allocate memory on host and device and copy constants to device
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// ---------------------------------------------------------------------------
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int ljsmt_gpu_init(const int ntypes, double **cutsq, double **host_lj1,
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double **host_lj2, double **host_lj3, double **host_lj4,
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double **offset, double *special_lj, const int inum,
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const int nall, const int max_nbors, const int maxspecial,
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const double cell_size, int &gpu_mode, FILE *screen,
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double **host_ljsw1, double **host_ljsw2, double **host_ljsw3,
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double **host_ljsw4, double **cut_inner, double **cut_inner_sq) {
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LJSMTMF.clear();
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gpu_mode=LJSMTMF.device->gpu_mode();
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double gpu_split=LJSMTMF.device->particle_split();
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int first_gpu=LJSMTMF.device->first_device();
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int last_gpu=LJSMTMF.device->last_device();
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int world_me=LJSMTMF.device->world_me();
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int gpu_rank=LJSMTMF.device->gpu_rank();
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int procs_per_gpu=LJSMTMF.device->procs_per_gpu();
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LJSMTMF.device->init_message(screen,"lj/smooth",first_gpu,last_gpu);
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bool message=false;
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if (LJSMTMF.device->replica_me()==0 && screen)
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message=true;
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if (message) {
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fprintf(screen,"Initializing Device and compiling on process 0...");
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fflush(screen);
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}
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int init_ok=0;
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if (world_me==0)
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init_ok=LJSMTMF.init(ntypes, cutsq, host_lj1, host_lj2, host_lj3,
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host_lj4, offset, special_lj, inum, nall, 300,
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maxspecial, cell_size, gpu_split, screen,
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host_ljsw1, host_ljsw2, host_ljsw3, host_ljsw4, cut_inner, cut_inner_sq);
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LJSMTMF.device->world_barrier();
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if (message)
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fprintf(screen,"Done.\n");
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for (int i=0; i<procs_per_gpu; i++) {
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if (message) {
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if (last_gpu-first_gpu==0)
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fprintf(screen,"Initializing Device %d on core %d...",first_gpu,i);
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else
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fprintf(screen,"Initializing Devices %d-%d on core %d...",first_gpu,
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last_gpu,i);
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fflush(screen);
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}
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if (gpu_rank==i && world_me!=0)
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init_ok=LJSMTMF.init(ntypes, cutsq, host_lj1, host_lj2, host_lj3, host_lj4,
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offset, special_lj, inum, nall, 300, maxspecial,
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cell_size, gpu_split, screen, host_ljsw1, host_ljsw2, host_ljsw3,
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host_ljsw4, cut_inner, cut_inner_sq);
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LJSMTMF.device->gpu_barrier();
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if (message)
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fprintf(screen,"Done.\n");
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}
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if (message)
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fprintf(screen,"\n");
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if (init_ok==0)
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LJSMTMF.estimate_gpu_overhead();
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return init_ok;
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}
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// ---------------------------------------------------------------------------
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// Copy updated coeffs from host to device
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// ---------------------------------------------------------------------------
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void ljsmt_gpu_reinit(const int ntypes, double **cutsq, double **host_lj1,
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double **host_lj2, double **host_lj3, double **host_lj4,
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double **offset, double **host_ljsw1, double **host_ljsw2, double **host_ljsw3,
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double **host_ljsw4, double **cut_inner, double **cut_inner_sq) {
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int world_me=LJSMTMF.device->world_me();
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int gpu_rank=LJSMTMF.device->gpu_rank();
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int procs_per_gpu=LJSMTMF.device->procs_per_gpu();
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if (world_me==0)
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LJSMTMF.reinit(ntypes, cutsq, host_lj1, host_lj2, host_lj3, host_lj4, offset, host_ljsw1, host_ljsw2, host_ljsw3, host_ljsw4, cut_inner, cut_inner_sq);
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LJSMTMF.device->world_barrier();
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for (int i=0; i<procs_per_gpu; i++) {
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if (gpu_rank==i && world_me!=0)
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LJSMTMF.reinit(ntypes, cutsq, host_lj1, host_lj2, host_lj3, host_lj4, offset, host_ljsw1, host_ljsw2, host_ljsw3, host_ljsw4, cut_inner, cut_inner_sq);
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LJSMTMF.device->gpu_barrier();
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}
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}
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void ljsmt_gpu_clear() {
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LJSMTMF.clear();
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}
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int ** ljsmt_gpu_compute_n(const int ago, const int inum_full,
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const int nall, double **host_x, int *host_type,
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double *sublo, double *subhi, tagint *tag, int **nspecial,
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tagint **special, const bool eflag, const bool vflag,
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const bool eatom, const bool vatom, int &host_start,
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int **ilist, int **jnum, const double cpu_time,
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bool &success) {
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return LJSMTMF.compute(ago, inum_full, nall, host_x, host_type, sublo,
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||||
subhi, tag, nspecial, special, eflag, vflag, eatom,
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vatom, host_start, ilist, jnum, cpu_time, success);
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||||
}
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void ljsmt_gpu_compute(const int ago, const int inum_full, const int nall,
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||||
double **host_x, int *host_type, int *ilist, int *numj,
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||||
int **firstneigh, const bool eflag, const bool vflag,
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||||
const bool eatom, const bool vatom, int &host_start,
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||||
const double cpu_time, bool &success) {
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LJSMTMF.compute(ago,inum_full,nall,host_x,host_type,ilist,numj,
|
||||
firstneigh,eflag,vflag,eatom,vatom,host_start,cpu_time,success);
|
||||
}
|
||||
|
||||
double ljsmt_gpu_bytes() {
|
||||
return LJSMTMF.host_memory_usage();
|
||||
}
|
||||
|
||||
|
||||
@ -40,34 +40,40 @@ using namespace LAMMPS_NS;
|
||||
|
||||
// External functions from cuda library for atom decomposition
|
||||
|
||||
int ljl_gpu_init(const int ntypes, double **cutsq, double **host_lj1,
|
||||
int ljsmt_gpu_init(const int ntypes, double **cutsq, double **host_lj1,
|
||||
double **host_lj2, double **host_lj3, double **host_lj4,
|
||||
double **offset, double *special_lj, const int nlocal,
|
||||
const int nall, const int max_nbors, const int maxspecial,
|
||||
const double cell_size, int &gpu_mode, FILE *screen);
|
||||
const double cell_size, int &gpu_mode, FILE *screen,
|
||||
double **host_ljsw1, double **host_ljsw2, double **host_ljsw3,
|
||||
double **host_ljsw4,
|
||||
double **cut_inner, double **cut_innersq);
|
||||
|
||||
void ljl_gpu_reinit(const int ntypes, double **cutsq, double **host_lj1,
|
||||
void ljsmt_gpu_reinit(const int ntypes, double **cutsq, double **host_lj1,
|
||||
double **host_lj2, double **host_lj3, double **host_lj4,
|
||||
double **offset);
|
||||
double **offset,
|
||||
double **host_ljsw1, double **host_ljsw2, double **host_ljsw3,
|
||||
double **host_ljsw4,
|
||||
double **cut_inner, double **cut_innersq);
|
||||
|
||||
void ljl_gpu_clear();
|
||||
int ** ljl_gpu_compute_n(const int ago, const int inum,
|
||||
void ljsmt_gpu_clear();
|
||||
int ** ljsmt_gpu_compute_n(const int ago, const int inum,
|
||||
const int nall, double **host_x, int *host_type,
|
||||
double *sublo, double *subhi, tagint *tag, int **nspecial,
|
||||
tagint **special, const bool eflag, const bool vflag,
|
||||
const bool eatom, const bool vatom, int &host_start,
|
||||
int **ilist, int **jnum,
|
||||
const double cpu_time, bool &success);
|
||||
void ljl_gpu_compute(const int ago, const int inum, const int nall,
|
||||
void ljsmt_gpu_compute(const int ago, const int inum, const int nall,
|
||||
double **host_x, int *host_type, int *ilist, int *numj,
|
||||
int **firstneigh, const bool eflag, const bool vflag,
|
||||
const bool eatom, const bool vatom, int &host_start,
|
||||
const double cpu_time, bool &success);
|
||||
double ljl_gpu_bytes();
|
||||
double ljsmt_gpu_bytes();
|
||||
|
||||
/* ---------------------------------------------------------------------- */
|
||||
|
||||
PairLJSmoothGPU::PairLJSmoothGPU(LAMMPS *lmp) : PairLJCut(lmp), gpu_mode(GPU_FORCE)
|
||||
PairLJSmoothGPU::PairLJSmoothGPU(LAMMPS *lmp) : PairLJSmooth(lmp), gpu_mode(GPU_FORCE)
|
||||
{
|
||||
respa_enable = 0;
|
||||
cpu_time = 0.0;
|
||||
@ -81,7 +87,7 @@ PairLJSmoothGPU::PairLJSmoothGPU(LAMMPS *lmp) : PairLJCut(lmp), gpu_mode(GPU_FOR
|
||||
|
||||
PairLJSmoothGPU::~PairLJSmoothGPU()
|
||||
{
|
||||
ljl_gpu_clear();
|
||||
ljsmt_gpu_clear();
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------------------------- */
|
||||
@ -108,7 +114,7 @@ void PairLJSmoothGPU::compute(int eflag, int vflag)
|
||||
domain->bbox(domain->sublo_lamda,domain->subhi_lamda,sublo,subhi);
|
||||
}
|
||||
inum = atom->nlocal;
|
||||
firstneigh = ljl_gpu_compute_n(neighbor->ago, inum, nall,
|
||||
firstneigh = ljsmt_gpu_compute_n(neighbor->ago, inum, nall,
|
||||
atom->x, atom->type, sublo,
|
||||
subhi, atom->tag, atom->nspecial,
|
||||
atom->special, eflag, vflag, eflag_atom,
|
||||
@ -119,7 +125,7 @@ void PairLJSmoothGPU::compute(int eflag, int vflag)
|
||||
ilist = list->ilist;
|
||||
numneigh = list->numneigh;
|
||||
firstneigh = list->firstneigh;
|
||||
ljl_gpu_compute(neighbor->ago, inum, nall, atom->x, atom->type,
|
||||
ljsmt_gpu_compute(neighbor->ago, inum, nall, atom->x, atom->type,
|
||||
ilist, numneigh, firstneigh, eflag, vflag, eflag_atom,
|
||||
vflag_atom, host_start, cpu_time, success);
|
||||
}
|
||||
@ -140,10 +146,10 @@ void PairLJSmoothGPU::compute(int eflag, int vflag)
|
||||
|
||||
void PairLJSmoothGPU::init_style()
|
||||
{
|
||||
cut_respa = nullptr;
|
||||
//cut_respa = nullptr;
|
||||
|
||||
if (force->newton_pair)
|
||||
error->all(FLERR,"Cannot use newton pair with lj/cut/gpu pair style");
|
||||
error->all(FLERR,"Cannot use newton pair with lj/smooth/gpu pair style");
|
||||
|
||||
// Repeat cutsq calculation because done after call to init_style
|
||||
double maxcut = -1.0;
|
||||
@ -165,10 +171,11 @@ void PairLJSmoothGPU::init_style()
|
||||
int maxspecial=0;
|
||||
if (atom->molecular)
|
||||
maxspecial=atom->maxspecial;
|
||||
int success = ljl_gpu_init(atom->ntypes+1, cutsq, lj1, lj2, lj3, lj4,
|
||||
int success = ljsmt_gpu_init(atom->ntypes+1, cutsq, lj1, lj2, lj3, lj4,
|
||||
offset, force->special_lj, atom->nlocal,
|
||||
atom->nlocal+atom->nghost, 300, maxspecial,
|
||||
cell_size, gpu_mode, screen);
|
||||
cell_size, gpu_mode, screen, ljsw1, ljsw2,
|
||||
ljsw3, ljsw4, cut_inner, cut_inner_sq);
|
||||
GPU_EXTRA::check_flag(success,error,world);
|
||||
|
||||
if (gpu_mode == GPU_FORCE) {
|
||||
@ -184,7 +191,7 @@ void PairLJSmoothGPU::reinit()
|
||||
{
|
||||
Pair::reinit();
|
||||
|
||||
ljl_gpu_reinit(atom->ntypes+1, cutsq, lj1, lj2, lj3, lj4, offset);
|
||||
ljsmt_gpu_reinit(atom->ntypes+1, cutsq, lj1, lj2, lj3, lj4, offset, ljsw1, ljsw2, ljsw3, ljsw4, cut_inner, cut_inner_sq);
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------------------------- */
|
||||
@ -192,7 +199,7 @@ void PairLJSmoothGPU::reinit()
|
||||
double PairLJSmoothGPU::memory_usage()
|
||||
{
|
||||
double bytes = Pair::memory_usage();
|
||||
return bytes + ljl_gpu_bytes();
|
||||
return bytes + ljsmt_gpu_bytes();
|
||||
}
|
||||
|
||||
/* ---------------------------------------------------------------------- */
|
||||
@ -202,6 +209,7 @@ void PairLJSmoothGPU::cpu_compute(int start, int inum, int eflag, int /* vflag *
|
||||
int i,j,ii,jj,jnum,itype,jtype;
|
||||
double xtmp,ytmp,ztmp,delx,dely,delz,evdwl,fpair;
|
||||
double rsq,r2inv,r6inv,forcelj,factor_lj;
|
||||
double r,t,tsq,fskin;
|
||||
int *jlist;
|
||||
|
||||
double **x = atom->x;
|
||||
@ -233,8 +241,18 @@ void PairLJSmoothGPU::cpu_compute(int start, int inum, int eflag, int /* vflag *
|
||||
|
||||
if (rsq < cutsq[itype][jtype]) {
|
||||
r2inv = 1.0/rsq;
|
||||
r6inv = r2inv*r2inv*r2inv;
|
||||
forcelj = r6inv * (lj1[itype][jtype]*r6inv - lj2[itype][jtype]);
|
||||
if (rsq < cut_inner_sq[itype][jtype]) {
|
||||
r6inv = r2inv*r2inv*r2inv;
|
||||
forcelj = r6inv * (lj1[itype][jtype]*r6inv-lj2[itype][jtype]);
|
||||
} else {
|
||||
r = sqrt(rsq);
|
||||
t = r - cut_inner[itype][jtype];
|
||||
tsq = t*t;
|
||||
fskin = ljsw1[itype][jtype] + ljsw2[itype][jtype]*t +
|
||||
ljsw3[itype][jtype]*tsq + ljsw4[itype][jtype]*tsq*t;
|
||||
forcelj = fskin*r;
|
||||
}
|
||||
|
||||
fpair = factor_lj*forcelj*r2inv;
|
||||
|
||||
f[i][0] += delx*fpair;
|
||||
@ -242,8 +260,13 @@ void PairLJSmoothGPU::cpu_compute(int start, int inum, int eflag, int /* vflag *
|
||||
f[i][2] += delz*fpair;
|
||||
|
||||
if (eflag) {
|
||||
evdwl = r6inv*(lj3[itype][jtype]*r6inv-lj4[itype][jtype]) -
|
||||
offset[itype][jtype];
|
||||
if (rsq < cut_inner_sq[itype][jtype])
|
||||
evdwl = r6inv * (lj3[itype][jtype]*r6inv -
|
||||
lj4[itype][jtype]) - offset[itype][jtype];
|
||||
else
|
||||
evdwl = ljsw0[itype][jtype] - ljsw1[itype][jtype]*t -
|
||||
ljsw2[itype][jtype]*tsq/2.0 - ljsw3[itype][jtype]*tsq*t/3.0 -
|
||||
ljsw4[itype][jtype]*tsq*tsq/4.0 - offset[itype][jtype];
|
||||
evdwl *= factor_lj;
|
||||
}
|
||||
|
||||
|
||||
@ -20,11 +20,11 @@ PairStyle(lj/smooth/gpu,PairLJSmoothGPU)
|
||||
#ifndef LMP_PAIR_LJ_SMOOTH_GPU_H
|
||||
#define LMP_PAIR_LJ_SMOOTH_GPU_H
|
||||
|
||||
#include "pair_lj_cut.h"
|
||||
#include "pair_lj_smooth.h"
|
||||
|
||||
namespace LAMMPS_NS {
|
||||
|
||||
class PairLJSmoothGPU : public PairLJCut {
|
||||
class PairLJSmoothGPU : public PairLJSmooth {
|
||||
public:
|
||||
PairLJSmoothGPU(LAMMPS *lmp);
|
||||
~PairLJSmoothGPU();
|
||||
@ -52,7 +52,7 @@ E: Insufficient memory on accelerator
|
||||
There is insufficient memory on one of the devices specified for the gpu
|
||||
package
|
||||
|
||||
E: Cannot use newton pair with lj/cut/gpu pair style
|
||||
E: Cannot use newton pair with lj/smooth/gpu pair style
|
||||
|
||||
Self-explanatory.
|
||||
|
||||
|
||||
Reference in New Issue
Block a user