revert permission change and replace 'b/c' with 'because'

src/GRANULAR/fix_wall_gran.cpp

@@ -1541,7 +1541,7 @@ int FixWallGran::pack_restart(int i, double *buf)
   if (!use_history) return 0;
 
   int n = 0;
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[n++] = size_history + 1;
   for (int m = 0; m < size_history; m++)
     buf[n++] = history_one[i][m];
@@ -1559,7 +1559,7 @@ void FixWallGran::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
   
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/GRANULAR/fix_wall_gran_region.cpp

@@ -479,7 +479,7 @@ int FixWallGranRegion::pack_restart(int i, double *buf)
     for (m = 0; m < size_history; m++)
       buf[n++] = history_many[i][iwall][m];
   }
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = n;
   return n;
 }
@@ -497,7 +497,7 @@ void FixWallGranRegion::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
   
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/MISC/fix_gld.cpp

@@ -547,7 +547,7 @@ int FixGLD::unpack_exchange(int nlocal, double *buf)
 int FixGLD::pack_restart(int i, double *buf)
 {
   int m = 0;
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[m++] = 3*prony_terms + 1;
   for (int k = 0; k < 3*prony_terms; k=k+3)
   {
@@ -567,7 +567,7 @@ void FixGLD::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to the nth set of extended variables
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
   
   int m = 0;
   for (int i = 0; i< nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/MISC/fix_ttm.cpp

@@ -656,7 +656,7 @@ void FixTTM::restart(char *buf)
 
 int FixTTM::pack_restart(int i, double *buf)
 {
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = 4;
   buf[1] = flangevin[i][0];
   buf[2] = flangevin[i][1];
@@ -673,7 +673,7 @@ void FixTTM::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
   
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/MOLECULE/fix_cmap.cpp

@@ -1041,7 +1041,7 @@ void FixCMAP::read_data_header(char *line)
     sscanf(line,BIGINT_FORMAT,&ncmap);
   } else error->all(FLERR,"Invalid read data header line for fix cmap");
 
-  // didn't set in constructor b/c this fix could be defined
+  // didn't set in constructor because this fix could be defined
   // before newton command
 
   newton_bond = force->newton_bond;
@@ -1291,7 +1291,7 @@ int FixCMAP::pack_restart(int i, double *buf)
     buf[n++] = ubuf(crossterm_atom4[i][m]).d;
     buf[n++] = ubuf(crossterm_atom5[i][m]).d;
   }
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = n;
 
   return n;
@@ -1306,7 +1306,7 @@ void FixCMAP::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
   
    int n = 0;
    for (int i = 0; i < nth; i++) n += static_cast<int> (extra[nlocal][n]);

src/USER-MISC/fix_gle.cpp

@@ -822,7 +822,7 @@ int FixGLE::unpack_exchange(int nlocal, double *buf)
 int FixGLE::pack_restart(int i, double *buf)
 {
   int m = 0;
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[m++] = 3*ns + 1;
   for (int k = 0; k < 3*ns; k=k+3)
   {
@@ -842,7 +842,7 @@ void FixGLE::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to the nth set of extended variables
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
   
   int m = 0;
   for (int i = 0; i< nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/USER-MISC/fix_pimd.cpp

@@ -794,7 +794,7 @@ int FixPIMD::pack_restart(int i, double *buf)
 {
   int offset=0;
   int pos = i * 3;
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[offset++] = size_peratom_cols+1;
 
   memcpy(buf+offset, nhc_eta[pos],        nhc_size_one_1); offset += nhc_offset_one_1;
@@ -812,7 +812,7 @@ void FixPIMD::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   int m = 0;
   for (int i=0; i<nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/USER-MISC/fix_srp.cpp

@@ -114,7 +114,7 @@ void FixSRP::init()
     error->all(FLERR,"Illegal bond particle type");
 
   // this fix must come before any fix which migrates atoms in its pre_exchange()
-  // b/c this fix's pre_exchange() creates per-atom data structure
+  // because this fix's pre_exchange() creates per-atom data structure
   // that data must be current for atom migration to carry it along
 
   for (int i = 0; i < modify->nfix; i++) {
@@ -555,7 +555,7 @@ void FixSRP::post_run()
 int FixSRP::pack_restart(int i, double *buf)
 {
   int m = 0;
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[m++] = 3;
   buf[m++] = array[i][0];
   buf[m++] = array[i][1];
@@ -571,7 +571,7 @@ void FixSRP::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
   
   int m = 0;
   for (int i = 0; i < nth; i++){

src/USER-MISC/fix_ti_spring.cpp

@@ -315,7 +315,7 @@ int FixTISpring::unpack_exchange(int nlocal, double *buf)
 
 int FixTISpring::pack_restart(int i, double *buf)
 {
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = 4;
   buf[1] = xoriginal[i][0];
   buf[2] = xoriginal[i][1];
@@ -332,7 +332,7 @@ void FixTISpring::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/USER-MISC/fix_ttm_mod.cpp

@@ -980,7 +980,7 @@ void FixTTMMod::restart(char *buf)
 
 int FixTTMMod::pack_restart(int i, double *buf)
 {
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = 4;
   buf[1] = flangevin[i][0];
   buf[2] = flangevin[i][1];
@@ -997,7 +997,7 @@ void FixTTMMod::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/USER-SDPD/fix_meso_move.cpp

@@ -948,7 +948,7 @@ int FixMesoMove::unpack_exchange (int nlocal, double *buf) {
 ------------------------------------------------------------------------- */
 
 int FixMesoMove::pack_restart (int i, double *buf) {
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = 4;
   buf[1] = xoriginal[i][0];
   buf[2] = xoriginal[i][1];
@@ -964,7 +964,7 @@ void FixMesoMove::unpack_restart (int nlocal, int nth) {
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/USER-SMD/fix_smd_tlsph_reference_configuration.cpp

@@ -450,7 +450,7 @@ int FixSMD_TLSPH_ReferenceConfiguration::unpack_exchange(int nlocal, double *buf
 
 int FixSMD_TLSPH_ReferenceConfiguration::pack_restart(int i, double *buf) {
         int m = 0;
-        // pack buf[0] this way b/c other fixes unpack it
+        // pack buf[0] this way because other fixes unpack it
         buf[m++] = 4 * npartner[i] + 2;
         buf[m++] = npartner[i];
         for (int n = 0; n < npartner[i]; n++) {
@@ -471,7 +471,7 @@ void FixSMD_TLSPH_ReferenceConfiguration::unpack_restart(int /*nlocal*/, int /*n
 // ipage = NULL if being called from granular pair style init()
 
 // skip to Nth set of extra values
-// unpack the Nth first values this way b/c other fixes pack them
+// unpack the Nth first values this way because other fixes pack them
 
 //      double **extra = atom->extra;
 //

src/fix_move.cpp

@@ -1193,7 +1193,7 @@ int FixMove::pack_restart(int i, double *buf)
     buf[n++] = qoriginal[i][2];
     buf[n++] = qoriginal[i][3];
   }
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = n;
   return n;
 }
@@ -1207,7 +1207,7 @@ void FixMove::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/fix_neigh_history.cpp

@@ -149,7 +149,7 @@ void FixNeighHistory::init()
     error->all(FLERR,"Neighbor history requires atoms have IDs");
 
   // this fix must come before any fix which migrates atoms in its pre_exchange()
-  // b/c this fix's pre_exchange() creates per-atom data structure
+  // because this fix's pre_exchange() creates per-atom data structure
   // that data must be current for atom migration to carry it along
 
   for (int i = 0; i < modify->nfix; i++) {
@@ -215,7 +215,7 @@ void FixNeighHistory::setup_post_neighbor()
    called during run before atom exchanges, including for restart files
    called at end of run via post_run()
    do not call during setup of run (setup_pre_exchange)
-     b/c there is no guarantee of a current NDS (even on continued run)
+     because there is no guarantee of a current NDS (even on continued run)
    if run command does a 2nd run with pre = no, then no neigh list
      will be built, but old neigh list will still have the info
    onesided and newton on and newton off versions
@@ -242,7 +242,7 @@ void FixNeighHistory::pre_exchange_onesided()
   double *allvalues,*onevalues;
 
   // NOTE: all operations until very end are with nlocal_neigh <= current nlocal
-  // b/c previous neigh list was built with nlocal_neigh
+  // because previous neigh list was built with nlocal_neigh
   // nlocal can be larger if other fixes added atoms at this pre_exchange()
 
   // clear two paged data structures
@@ -335,7 +335,7 @@ void FixNeighHistory::pre_exchange_newton()
 
   // NOTE: all operations until very end are with
   //   nlocal_neigh  <= current nlocal and nall_neigh
-  // b/c previous neigh list was built with nlocal_neigh & nghost_neigh
+  // because previous neigh list was built with nlocal_neigh & nghost_neigh
   // nlocal can be larger if other fixes added atoms at this pre_exchange()
 
   // clear two paged data structures
@@ -430,7 +430,7 @@ void FixNeighHistory::pre_exchange_newton()
 
   // perform reverse comm to augment
   // owned atom partner/valuepartner with ghost info
-  // use variable variant b/c size of packed data can be arbitrarily large
+  // use variable variant because size of packed data can be arbitrarily large
   //   if many touching neighbors for large particle
 
   commflag = PERPARTNER;
@@ -463,7 +463,7 @@ void FixNeighHistory::pre_exchange_no_newton()
   double *allvalues,*onevalues,*jvalues;
 
   // NOTE: all operations until very end are with nlocal_neigh <= current nlocal
-  // b/c previous neigh list was built with nlocal_neigh
+  // because previous neigh list was built with nlocal_neigh
   // nlocal can be larger if other fixes added atoms at this pre_exchange()
 
   // clear two paged data structures
@@ -708,10 +708,10 @@ void FixNeighHistory::grow_arrays(int nmax)
 void FixNeighHistory::copy_arrays(int i, int j, int /*delflag*/)
 {
   // just copy pointers for partner and valuepartner
-  // b/c can't overwrite chunk allocation inside ipage_atom,dpage_atom
+  // because can't overwrite chunk allocation inside ipage_atom,dpage_atom
   // incoming atoms in unpack_exchange just grab new chunks
   // so are orphaning chunks for migrating atoms
-  // OK, b/c will reset ipage_atom,dpage_atom on next reneighboring
+  // OK, because will reset ipage_atom,dpage_atom on next reneighboring
 
   npartner[j] = npartner[i];
   partner[j] = partner[i];
@@ -853,7 +853,7 @@ int FixNeighHistory::pack_restart(int i, double *buf)
     memcpy(&buf[m],&valuepartner[i][dnum*n],dnumbytes);
     m += dnum;
   }
-  // pack buf[0] this way b/c other fixes unpack it  
+  // pack buf[0] this way because other fixes unpack it  
   buf[0] = m;
   return m;
 }
@@ -869,7 +869,7 @@ void FixNeighHistory::unpack_restart(int nlocal, int nth)
   if (ipage_atom == NULL) allocate_pages();
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   double **extra = atom->extra;
 

src/fix_property_atom.cpp

@@ -192,7 +192,7 @@ int FixPropertyAtom::setmask()
 void FixPropertyAtom::init()
 {
   // error if atom style has changed since fix was defined
-  // don't allow this b/c user could change to style that defines molecule,q
+  // don't allow this because user could change to style that defines molecule,q
 
   if (strcmp(astyle,atom->atom_style) != 0)
     error->all(FLERR,"Atom style was redefined after using fix property/atom");
@@ -579,7 +579,7 @@ int FixPropertyAtom::unpack_exchange(int nlocal, double *buf)
 
 int FixPropertyAtom::pack_restart(int i, double *buf)
 {
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = nvalue+1;
 
   int m = 1;
@@ -603,7 +603,7 @@ void FixPropertyAtom::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/fix_spring_self.cpp

@@ -264,7 +264,7 @@ int FixSpringSelf::unpack_exchange(int nlocal, double *buf)
 
 int FixSpringSelf::pack_restart(int i, double *buf)
 {
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = 4;
   buf[1] = xoriginal[i][0];
   buf[2] = xoriginal[i][1];
@@ -281,7 +281,7 @@ void FixSpringSelf::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/fix_store.cpp

@@ -280,7 +280,7 @@ int FixStore::pack_restart(int i, double *buf)
     return 1;
   }
 
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = nvalues+1;
   if (vecflag) buf[1] = vstore[i];
   else
@@ -300,7 +300,7 @@ void FixStore::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);

src/fix_store_state.cpp

@@ -611,7 +611,7 @@ int FixStoreState::unpack_exchange(int nlocal, double *buf)
 
 int FixStoreState::pack_restart(int i, double *buf)
 {
-  // pack buf[0] this way b/c other fixes unpack it
+  // pack buf[0] this way because other fixes unpack it
   buf[0] = nvalues+1;
   for (int m = 0; m < nvalues; m++) buf[m+1] = values[i][m];
   return nvalues+1;
@@ -626,7 +626,7 @@ void FixStoreState::unpack_restart(int nlocal, int nth)
   double **extra = atom->extra;
 
   // skip to Nth set of extra values
-  // unpack the Nth first values this way b/c other fixes pack them
+  // unpack the Nth first values this way because other fixes pack them
 
   int m = 0;
   for (int i = 0; i < nth; i++) m += static_cast<int> (extra[nlocal][m]);