spelling and improved consistency with other doc pages

doc/src/dump_modify.rst

@@ -702,7 +702,7 @@ The *skip* keyword can be used with all dump styles.  It allows a dump
 snapshot to be skipped (not written to the dump file), if a condition
 is met.  The condition is computed by an :doc:`equal-style variable
 <variable>`, which should be specified as v_name, where name is the
-variable name.  If the variable evaulation returns a non-zero value,
+variable name.  If the variable evaluation returns a non-zero value,
 then the dump snapshot is skipped.  If it returns zero, the dump
 proceeds as usual.  Note that :doc:`equal-style variable <variable>`
 can contain Boolean operators which effectively evaluate as a true
@@ -718,12 +718,12 @@ value.
 The *sort* keyword determines whether lines of per-atom output in a
 snapshot are sorted or not.  A sort value of *off* means they will
 typically be written in indeterminate order, either in serial or
-parallel.  This is the case even in serial if the :doc:`atom_modify
-sort <atom_modify>` option is turned on, which it is by default, to
-improve performance.  A sort value of *id* means sort the output by
-atom ID.  A sort value of N or -N means sort the output by the value
-in the Nth column of per-atom info in either ascending or descending
-order.
+parallel.  This is the case even in serial if the :doc:`atom_modify sort
+<atom_modify>` option is turned on, which it is by default, to improve
+performance.  A sort value of *id* means sort the output by atom ID.  A
+sort value of :math:`N` or :math:`-N` means sort the output by the value
+in the :math:`N`\ th column of per-atom info in either ascending or
+descending order.
 
 The dump *local* style cannot be sorted by atom ID, since there are
 typically multiple lines of output per atom.  Some dump styles, such
@@ -766,7 +766,7 @@ attributes that can be tested for are the same as those that can be
 specified in the :doc:`dump custom <dump>` command, with the exception
 of the *element* attribute, since it is not a numeric value.  Note
 that a different attributes can be used than those output by the
-:doc:`dump custom <dump>` command.  E.g. you can output the
+:doc:`dump custom <dump>` command.  For example, you can output the
 coordinates and stress of atoms whose energy is above some threshold.
 
 If an atom-style variable is used as the attribute, then it can

doc/src/fix_pair.rst

@@ -8,12 +8,12 @@ Syntax
 
 .. parsed-literal::
 
-   fix ID group-ID pair N pairstyle name flag ...
+   fix ID group-ID pair N pstyle name flag ...
 
 * ID, group-ID are documented in :doc:`fix <fix>` command
 * pair = style name of this fix command
 * N = invoke this fix once every N timesteps
-* pairstyle = name of pair style to extract info from (e.g. eam)
+* pstyle = name of pair style to extract info from (e.g. eam)
 * one or more name/flag pairs can be listed
 * name = name of quantity the pair style allows extraction of
 * flag = 1 if pair style needs to be triggered to produce data for name, 0 if not
@@ -46,7 +46,7 @@ These are example use cases:
 
 The *N* argument determines how often the fix is invoked.
 
-The *pairstyle* argument is the name of the pair style.  It can be a
+The *pstyle* argument is the name of the pair style.  It can be a
 sub-style used in a :doc:`pair_style hybrid <pair_hybrid>` command.
 
 One or more *name/flag* pairs of arguments follow.  Each *name* is a
@@ -55,11 +55,11 @@ request.  See the doc pages for individual :doc:`pair_styles
 <pair_style>` to see what fix pair requests (if any) they support.
 
 The *flag* setting determines whether this fix will also trigger the
-pair style to compute the named quantity so it can be extracted.  If
-the quantity is always computed by the pair style, no trigger is
-needed; specify *flag* = 0.  If the quantity is not always computed
-(e.g. it is expensive to calculate), then specify *flag* = 1.  This
-will trigger the quantity to be calculated only on timesteps it is
+pair style to compute the named quantity so it can be extracted.  If the
+quantity is always computed by the pair style, no trigger is needed;
+specify *flag* = 0.  If the quantity is not always computed
+(e.g. because it is expensive to calculate), then specify *flag* = 1.
+This will trigger the quantity to be calculated only on timesteps it is
 needed.  Again, see the doc pages for individual :doc:`pair_styles
 <pair_style>` to determine which fix pair requests (if any) need to be
 triggered with a *flag* = 1 setting.
@@ -71,12 +71,16 @@ atom, then this fix stores it as a per-atom vector.  Otherwise a
 per-atom array is created, with its data in the order of the *name*
 arguments.
 
-For example, :doc:`pair_style amoeba <pair_amoeba>` allows extraction
-of two named quantities: "uind" and "uinp", both of which are
-3-vectors for each atom, i.e. dipole moments.  If this fix specifies
-"uind" and "uinp" (in that order), then a 6-column per-atom array will
-be created.  Columns 1-3 will store the "uind" values; columns 4-6
-will store the "uinp" values.
+For example, :doc:`pair_style amoeba <pair_amoeba>` allows extraction of
+two named quantities: "uind" and "uinp", both of which are 3-vectors for
+each atom, i.e. dipole moments. In the example below a 6-column per-atom
+array will be created.  Columns 1-3 will store the "uind" values;
+columns 4-6 will store the "uinp" values.
+
+.. code-block:: LAMMPS
+
+   pair_style amoeba
+   fix ex all pair amoeba 10 uind 0 uinp 0
 
 Restart, fix_modify, output, run start/stop, minimize info
 """""""""""""""""""""""""""""""""""""""""""""""""""""""""""

doc/src/pair_amoeba.rst

@@ -158,15 +158,15 @@ settings.
 
 .. versionadded:: TBD
 
-The *amoeba* and *hippo* pair styles support extraction of two
-per-atom quantities by the :doc:`fix pair <fix_pair>` command.  This
-allows the quantities to be output to files by the :doc:`dump <dump>`
-or otherwise processed by other LAMMPS commamds.
+The *amoeba* and *hippo* pair styles support extraction of two per-atom
+quantities by the :doc:`fix pair <fix_pair>` command.  This allows the
+quantities to be output to files by the :doc:`dump <dump>` or otherwise
+processed by other LAMMPS commands.
 
-The names of the two quantites are "uind" and "uinp" for the induced
-dipole moments for each atom.  Neither quantity needs to be triggered
-by the :doc:`fix pair <fix_pair>` command in order for these pair
-styles to calculate it.
+The names of the two quantities are "uind" and "uinp" for the induced
+dipole moments for each atom.  Neither quantity needs to be triggered by
+the :doc:`fix pair <fix_pair>` command in order for these pair styles to
+calculate it.
 
 ----------
 

doc/src/pair_eam.rst

@@ -447,15 +447,14 @@ identical to the FS EAM files (see above).
 .. versionadded:: TBD
 
 The *eam*, *eam/alloy*, *eam/fs*, and *eam/he* pair styles support
-extraction of two per-atom quantities by the :doc:`fix pair
-<fix_pair>` command.  This allows the quantities to be output to files
-by the :doc:`dump <dump>` or otherwise processed by other LAMMPS
-commamds.
+extraction of two per-atom quantities by the :doc:`fix pair <fix_pair>`
+command.  This allows the quantities to be output to files by the
+:doc:`dump <dump>` or otherwise processed by other LAMMPS commands.
 
-The names of the two quantites are "rho" and "fp" for the density and
+The names of the two quantities are "rho" and "fp" for the density and
 derivative of the embedding energy for each atom.  Neither quantity
-needs to be triggered by the :doc:`fix pair <fix_pair>` command in
-order for these pair styles to calculate it.
+needs to be triggered by the :doc:`fix pair <fix_pair>` command in order
+for these pair styles to calculate it.
 
 ----------
 

doc/utils/sphinx-config/false_positives.txt

@@ -3581,7 +3581,9 @@ UEF
 ufm
 Uhlenbeck
 Ui
+uind
 uInfParallel
+uinp
 uk
 ul
 ulb