From e6164d65f234ad55340ce50cee1d5d596aa970a2 Mon Sep 17 00:00:00 2001
From: sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa>
Date: Sat, 26 Jan 2013 00:32:41 +0000
Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@9344
 f3b2605a-c512-4ea7-a41b-209d697bcdaa

---
 doc/Section_commands.html |  2 +-
 doc/Section_commands.txt  |  2 +-
 doc/read_data.html        | 21 ++++++++++++---------
 doc/read_data.txt         |  6 +++---
 4 files changed, 17 insertions(+), 14 deletions(-)

diff --git a/doc/Section_commands.html b/doc/Section_commands.html
index 94ad8026e5..e19d54733f 100644
--- a/doc/Section_commands.html
+++ b/doc/Section_commands.html
@@ -389,7 +389,7 @@ each style or click on the style itself for a full description:
 <TR ALIGN="center"><TD ><A HREF = "compute_pe_atom.html">pe/atom</A></TD><TD ><A HREF = "compute_pressure.html">pressure</A></TD><TD ><A HREF = "compute_property_atom.html">property/atom</A></TD><TD ><A HREF = "compute_property_local.html">property/local</A></TD><TD ><A HREF = "compute_property_molecule.html">property/molecule</A></TD><TD ><A HREF = "compute_rdf.html">rdf</A></TD></TR>
 <TR ALIGN="center"><TD ><A HREF = "compute_reduce.html">reduce</A></TD><TD ><A HREF = "compute_reduce.html">reduce/region</A></TD><TD ><A HREF = "compute_slice.html">slice</A></TD><TD ><A HREF = "compute_stress_atom.html">stress/atom</A></TD><TD ><A HREF = "compute_temp.html">temp</A></TD><TD ><A HREF = "compute_temp_asphere.html">temp/asphere</A></TD></TR>
 <TR ALIGN="center"><TD ><A HREF = "compute_temp_com.html">temp/com</A></TD><TD ><A HREF = "compute_temp_deform.html">temp/deform</A></TD><TD ><A HREF = "compute_temp_partial.html">temp/partial</A></TD><TD ><A HREF = "compute_temp_profile.html">temp/profile</A></TD><TD ><A HREF = "compute_temp_ramp.html">temp/ramp</A></TD><TD ><A HREF = "compute_temp_region.html">temp/region</A></TD></TR>
-<TR ALIGN="center"><TD ><A HREF = "compute_temp_sphere.html">temp/sphere</A></TD><TD ><A HREF = "compute_ti.html">ti</A></TD><TD ><A HREF = "compute_coord_atom.html">voronoi/atom</A> 
+<TR ALIGN="center"><TD ><A HREF = "compute_temp_sphere.html">temp/sphere</A></TD><TD ><A HREF = "compute_ti.html">ti</A></TD><TD ><A HREF = "compute_voronoi_atom.html">voronoi/atom</A> 
 </TD></TR></TABLE></DIV>
 
 <P>These are compute styles contributed by users, which can be used if
diff --git a/doc/Section_commands.txt b/doc/Section_commands.txt
index 85d9101a0e..a313d6ca8b 100644
--- a/doc/Section_commands.txt
+++ b/doc/Section_commands.txt
@@ -595,7 +595,7 @@ each style or click on the style itself for a full description:
 "temp/region"_compute_temp_region.html,
 "temp/sphere"_compute_temp_sphere.html,
 "ti"_compute_ti.html,
-"voronoi/atom"_compute_coord_atom.html :tb(c=6,ea=c)
+"voronoi/atom"_compute_voronoi_atom.html :tb(c=6,ea=c)
 
 These are compute styles contributed by users, which can be used if
 "LAMMPS is built with the appropriate
diff --git a/doc/read_data.html b/doc/read_data.html
index d0ba1151a9..28e7148e8a 100644
--- a/doc/read_data.html
+++ b/doc/read_data.html
@@ -571,10 +571,11 @@ section must be integers (1, not 1.0).
 
 <LI>line syntax: atom-ID shapex shapey shapez quatw quati quatj quatk 
 
-<LI>  atom-ID = ID of atom which is an ellipsoid
+<PRE>  atom-ID = ID of atom which is an ellipsoid
   shapex,shapey,shapez = 3 diameters of ellipsoid (distance units)
-  quatw,quati,quatj,quatk = quaternion components for orientation of atom
-example: 
+  quatw,quati,quatj,quatk = quaternion components for orientation of atom 
+</PRE>
+<LI>example: 
 
 <PRE>  12 1 2 1 1 0 0 0 
 </PRE>
@@ -674,10 +675,11 @@ values in this section must be integers (1, not 1.0).
 
 <LI>line syntax: atom-ID x1 y1 x2 y2 
 
-<LI>  atom-ID = ID of atom which is a line segment
+<PRE>  atom-ID = ID of atom which is a line segment
   x1,y1 = 1st end point
-  x2,y2 = 2nd end point
-example: 
+  x2,y2 = 2nd end point 
+</PRE>
+<LI>example: 
 
 <PRE>  12 1.0 0.0 2.0 0.0 
 </PRE>
@@ -763,11 +765,12 @@ script.
 
 <LI>line syntax: atom-ID x1 y1 x2 y2 
 
-<LI>  atom-ID = ID of atom which is a line segment
+<PRE>  atom-ID = ID of atom which is a line segment
   x1,y1,z1 = 1st corner point
   x2,y2,z2 = 2nd corner point
-  x3,y3,z3 = 3rd corner point
-example: 
+  x3,y3,z3 = 3rd corner point 
+</PRE>
+<LI>example: 
 
 <PRE>  12 0.0 0.0 0.0 2.0 0.0 1.0 0.0 2.0 1.0 
 </PRE>
diff --git a/doc/read_data.txt b/doc/read_data.txt
index 17687ca800..17f627c1eb 100644
--- a/doc/read_data.txt
+++ b/doc/read_data.txt
@@ -518,7 +518,7 @@ one line per ellipsoid :ulb,l
 line syntax: atom-ID shapex shapey shapez quatw quati quatj quatk :l
   atom-ID = ID of atom which is an ellipsoid
   shapex,shapey,shapez = 3 diameters of ellipsoid (distance units)
-  quatw,quati,quatj,quatk = quaternion components for orientation of atom
+  quatw,quati,quatj,quatk = quaternion components for orientation of atom :pre
 example: :l
   12 1 2 1 1 0 0 0 :pre
 :ule
@@ -604,7 +604,7 @@ one line per line segment :ulb,l
 line syntax: atom-ID x1 y1 x2 y2 :l
   atom-ID = ID of atom which is a line segment
   x1,y1 = 1st end point
-  x2,y2 = 2nd end point
+  x2,y2 = 2nd end point :pre
 example: :l
   12 1.0 0.0 2.0 0.0 :pre
 :ule
@@ -677,7 +677,7 @@ line syntax: atom-ID x1 y1 x2 y2 :l
   atom-ID = ID of atom which is a line segment
   x1,y1,z1 = 1st corner point
   x2,y2,z2 = 2nd corner point
-  x3,y3,z3 = 3rd corner point
+  x3,y3,z3 = 3rd corner point :pre
 example: :l
   12 0.0 0.0 0.0 2.0 0.0 1.0 0.0 2.0 1.0 :pre
 :ule