From e81f2934e02793b0f8b012b4b514b3820a1ed8d8 Mon Sep 17 00:00:00 2001 From: sjplimp Date: Mon, 16 Jul 2012 16:18:09 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@8488 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/change_box.html | 18 +++++++++--------- doc/change_box.txt | 18 +++++++++--------- doc/dihedral_style.html | 4 ++-- doc/kspace_modify.html | 18 +++++++++--------- doc/kspace_modify.txt | 18 +++++++++--------- 5 files changed, 38 insertions(+), 38 deletions(-) diff --git a/doc/change_box.html b/doc/change_box.html index d3b73f822d..898afe960d 100644 --- a/doc/change_box.html +++ b/doc/change_box.html @@ -127,15 +127,15 @@ changed from its initial 3d configuration; see the changes dramatically, the mapping of processors to the simulation box may not end up as optimal as the initial mapping attempted to be.

-

IMPORTANT NOTE: Because the keywords used in this command are -applied sequentially to the simulation box and the atoms in it, -in the order specified, special care must be taken with triclinic -cells to avoid exceeding the limits on skew after each transformation -in the sequence. If skew is exceeded before the final transformation -this can be avoided by changing the order of the sequence, or breaking -the transformation up in to two or more smaller transformations. For more -information on the allowed limits for box skew see the -the doc page for fix deform. +

IMPORTANT NOTE: Because the keywords used in this command are applied +one at a time to the simulation box and the atoms in it, care must be +taken with triclinic cells to avoid exceeding the limits on skew after +each transformation in the sequence. If skew is exceeded before the +final transformation this can be avoided by changing the order of the +sequence, or breaking the transformation into two or more smaller +transformations. For more information on the allowed limits for box +skew see the discussion on triclinic boxes on this +page.

diff --git a/doc/change_box.txt b/doc/change_box.txt index 26d280ac2a..1a492a2c39 100644 --- a/doc/change_box.txt +++ b/doc/change_box.txt @@ -119,15 +119,15 @@ changed from its initial 3d configuration; see the changes dramatically, the mapping of processors to the simulation box may not end up as optimal as the initial mapping attempted to be. -IMPORTANT NOTE: Because the keywords used in this command are -applied sequentially to the simulation box and the atoms in it, -in the order specified, special care must be taken with triclinic -cells to avoid exceeding the limits on skew after each transformation -in the sequence. If skew is exceeded before the final transformation -this can be avoided by changing the order of the sequence, or breaking -the transformation up in to two or more smaller transformations. For more -information on the allowed limits for box skew see the -the doc page for "fix deform"_fix_deform.html. +IMPORTANT NOTE: Because the keywords used in this command are applied +one at a time to the simulation box and the atoms in it, care must be +taken with triclinic cells to avoid exceeding the limits on skew after +each transformation in the sequence. If skew is exceeded before the +final transformation this can be avoided by changing the order of the +sequence, or breaking the transformation into two or more smaller +transformations. For more information on the allowed limits for box +skew see the discussion on triclinic boxes on "this +page"_Section_howto.html#howto_12. :line diff --git a/doc/dihedral_style.html b/doc/dihedral_style.html index 13c2add297..5e8d94be47 100644 --- a/doc/dihedral_style.html +++ b/doc/dihedral_style.html @@ -67,8 +67,8 @@ depends on the sign of phi, which may be reflected in the value of the coefficients you specify.

Here are other important points to take note of when defining the -LAMMPS dihedral coefficients in the formulas for varoius styles, so -that they are compatible with other force fields: +LAMMPS dihedral coefficients in the formulas for some styles, so that +they are compatible with other force fields: