Update Kokkos library in LAMMPS to v2.9.00

This commit is contained in:
Stan Moore
2019-06-28 11:23:24 -06:00
parent 7f342b1cd0
commit ea2e73119d
506 changed files with 37043 additions and 6851 deletions

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@ -1,5 +1,5 @@
TRIBITS_PACKAGE_DEFINE_DEPENDENCIES(
LIB_REQUIRED_PACKAGES KokkosCore KokkosContainers
LIB_OPTIONAL_TPLS Pthread CUDA HWLOC
LIB_OPTIONAL_TPLS Pthread CUDA HWLOC HPX
TEST_OPTIONAL_TPLS CUSPARSE
)

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@ -328,6 +328,8 @@ public:
parallel_for("Kokkos::Sort::Copy", Kokkos::RangePolicy<execution_space>(0,len),functor);
}
Kokkos::fence();
}
template<class ValuesViewType>

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@ -42,6 +42,12 @@ IF(Kokkos_ENABLE_OpenMP)
)
ENDIF()
IF(Kokkos_ENABLE_HPX)
LIST( APPEND SOURCES
TestHPX.cpp
)
ENDIF()
IF(Kokkos_ENABLE_Serial)
LIST( APPEND SOURCES
TestSerial.cpp

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@ -49,6 +49,12 @@ ifeq ($(KOKKOS_INTERNAL_USE_OPENMP), 1)
TEST_TARGETS += test-openmp
endif
ifeq ($(KOKKOS_INTERNAL_USE_HPX), 1)
OBJ_HPX = TestHPX.o UnitTestMain.o gtest-all.o
TARGETS += KokkosAlgorithms_UnitTest_HPX
TEST_TARGETS += test-hpx
endif
ifeq ($(KOKKOS_INTERNAL_USE_SERIAL), 1)
OBJ_SERIAL = TestSerial.o UnitTestMain.o gtest-all.o
TARGETS += KokkosAlgorithms_UnitTest_Serial
@ -67,6 +73,9 @@ KokkosAlgorithms_UnitTest_Threads: $(OBJ_THREADS) $(KOKKOS_LINK_DEPENDS)
KokkosAlgorithms_UnitTest_OpenMP: $(OBJ_OPENMP) $(KOKKOS_LINK_DEPENDS)
$(LINK) $(EXTRA_PATH) $(OBJ_OPENMP) $(KOKKOS_LIBS) $(LIB) $(KOKKOS_LDFLAGS) $(LDFLAGS) -o KokkosAlgorithms_UnitTest_OpenMP
KokkosAlgorithms_UnitTest_HPX: $(OBJ_HPX) $(KOKKOS_LINK_DEPENDS)
$(LINK) $(EXTRA_PATH) $(OBJ_HPX) $(KOKKOS_LIBS) $(LIB) $(KOKKOS_LDFLAGS) $(LDFLAGS) -o KokkosAlgorithms_UnitTest_HPX
KokkosAlgorithms_UnitTest_Serial: $(OBJ_SERIAL) $(KOKKOS_LINK_DEPENDS)
$(LINK) $(EXTRA_PATH) $(OBJ_SERIAL) $(KOKKOS_LIBS) $(LIB) $(KOKKOS_LDFLAGS) $(LDFLAGS) -o KokkosAlgorithms_UnitTest_Serial
@ -82,6 +91,9 @@ test-threads: KokkosAlgorithms_UnitTest_Threads
test-openmp: KokkosAlgorithms_UnitTest_OpenMP
./KokkosAlgorithms_UnitTest_OpenMP
test-hpx: KokkosAlgorithms_UnitTest_HPX
./KokkosAlgorithms_UnitTest_HPX
test-serial: KokkosAlgorithms_UnitTest_Serial
./KokkosAlgorithms_UnitTest_Serial

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@ -0,0 +1,96 @@
/*
//@HEADER
// ************************************************************************
//
// Kokkos v. 2.0
// Copyright (2014) Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Christian R. Trott (crtrott@sandia.gov)
//
// ************************************************************************
//@HEADER
*/
#include <Kokkos_Macros.hpp>
#ifdef KOKKOS_ENABLE_HPX
#include <gtest/gtest.h>
#include <Kokkos_Core.hpp>
//----------------------------------------------------------------------------
#include <TestRandom.hpp>
#include <TestSort.hpp>
#include <iomanip>
namespace Test {
class hpx : public ::testing::Test {
protected:
static void SetUpTestCase()
{
std::cout << std::setprecision(5) << std::scientific;
}
static void TearDownTestCase()
{
}
};
#define HPX_RANDOM_XORSHIFT64( num_draws ) \
TEST_F( hpx, Random_XorShift64 ) { \
Impl::test_random<Kokkos::Random_XorShift64_Pool<Kokkos::Experimental::HPX> >(num_draws); \
}
#define HPX_RANDOM_XORSHIFT1024( num_draws ) \
TEST_F( hpx, Random_XorShift1024 ) { \
Impl::test_random<Kokkos::Random_XorShift1024_Pool<Kokkos::Experimental::HPX> >(num_draws); \
}
#define HPX_SORT_UNSIGNED( size ) \
TEST_F( hpx, SortUnsigned ) { \
Impl::test_sort< Kokkos::Experimental::HPX, unsigned >(size); \
}
HPX_RANDOM_XORSHIFT64( 10240000 )
HPX_RANDOM_XORSHIFT1024( 10130144 )
HPX_SORT_UNSIGNED(171)
#undef HPX_RANDOM_XORSHIFT64
#undef HPX_RANDOM_XORSHIFT1024
#undef HPX_SORT_UNSIGNED
} // namespace test
#else
void KOKKOS_ALGORITHMS_UNITTESTS_TESTHPX_PREVENT_LINK_ERROR() {}
#endif

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@ -225,9 +225,9 @@ void test_dynamic_view_sort(unsigned int n )
Kokkos::Random_XorShift64_Pool<ExecutionSpace> g(1931);
Kokkos::fill_random(keys_view,g,Kokkos::Random_XorShift64_Pool<ExecutionSpace>::generator_type::MAX_URAND);
ExecutionSpace::fence();
ExecutionSpace().fence();
Kokkos::deep_copy(keys,keys_view);
//ExecutionSpace::fence();
//ExecutionSpace().fence();
double sum_before = 0.0;
double sum_after = 0.0;
@ -237,9 +237,9 @@ void test_dynamic_view_sort(unsigned int n )
Kokkos::sort(keys, 0 /* begin */ , n /* end */ );
ExecutionSpace::fence(); // Need this fence to prevent BusError with Cuda
ExecutionSpace().fence(); // Need this fence to prevent BusError with Cuda
Kokkos::deep_copy( keys_view , keys );
//ExecutionSpace::fence();
//ExecutionSpace().fence();
Kokkos::parallel_reduce(n,sum<ExecutionSpace, KeyType>(keys_view),sum_after);
Kokkos::parallel_reduce(n-1,is_sorted_struct<ExecutionSpace, KeyType>(keys_view),sort_fails);