updated and slightly refactored tabulation for vashishta pair style
- tables are now dimensioned by nelements instead of ntypes - tables are only created if used - correctly identify max size of table - add test for illegal cutoff for tabulation - allocated memory for tables is accounted for - add example input using 16-bit tables
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examples/vashishta/in.indiumphosphide-tabulated
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examples/vashishta/in.indiumphosphide-tabulated
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# calculate the energy volume curve for InP zincblende
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# define volume range and filename
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variable ndelta equal 100
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variable volatom_min equal 20.0
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variable volatom_max equal 29.0
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variable evsvolfile string evsvol.dat
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# set up cell
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units metal
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boundary p p p
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# setup loop variables for box volume
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variable amin equal ${volatom_min}^(1/3)*2
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variable delta equal (${volatom_max}-${volatom_min})/${ndelta}
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variable scale equal (${delta}/v_volatom+1)^(1/3)
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# set up 8 atom InP zincblende unit cell
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lattice diamond ${amin}
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region box prism &
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0 1 &
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0 1 &
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0 1 &
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0 0 0
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create_box 2 box
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create_atoms 1 box &
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basis 5 2 &
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basis 6 2 &
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basis 7 2 &
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basis 8 2
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mass 1 114.76
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mass 2 30.98
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# choose potential
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pair_style vashishta
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pair_coeff * * InP.vashishta In P
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pair_modify table 16
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# setup neighbor style
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neighbor 1.0 nsq
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neigh_modify once no every 1 delay 0 check yes
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# setup output
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thermo_style custom step temp pe press vol
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thermo_modify norm no
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variable volatom equal vol/atoms
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variable eatom equal pe/atoms
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print "# Volume [A^3/atom] Energy [eV/atom]" file ${evsvolfile}
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# loop over range of volumes
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label loop
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variable i loop ${ndelta}
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change_box all x scale ${scale} y scale ${scale} z scale ${scale} remap
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# calculate energy
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# no energy minimization needed for zincblende
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run 0
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print "${volatom} ${eatom}" append ${evsvolfile}
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next i
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jump SELF loop
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29
examples/vashishta/in.sio2-tabulated
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29
examples/vashishta/in.sio2-tabulated
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# test Vashishta potential for quartz
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units metal
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boundary p p p
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atom_style atomic
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read_data data.quartz
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replicate 4 4 4
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velocity all create 2000.0 277387 mom yes
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displace_atoms all move 0.05 0.9 0.4 units box
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pair_style vashishta
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pair_coeff * * SiO.1990.vashishta Si O
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pair_modify table 16
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neighbor 0.3 bin
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neigh_modify delay 10
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fix 1 all nve
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thermo 10
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timestep 0.001
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#dump 1 all cfg 10 *.cfg mass type xs ys zs vx vy vz fx fy fz
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#dump_modify 1 element Si O
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run 100
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