diff --git a/doc/src/Commands_compute.rst b/doc/src/Commands_compute.rst index 1c46bfad6e..878b7b072e 100644 --- a/doc/src/Commands_compute.rst +++ b/doc/src/Commands_compute.rst @@ -79,9 +79,6 @@ KOKKOS, o = USER-OMP, t = OPT. * :doc:`ke/atom/eff ` * :doc:`ke/eff ` * :doc:`ke/rigid ` - * :doc:`meso/e/atom ` - * :doc:`meso/rho/atom ` - * :doc:`meso/t/atom ` * :doc:`momentum ` * :doc:`msd ` * :doc:`msd/chunk ` @@ -133,6 +130,9 @@ KOKKOS, o = USER-OMP, t = OPT. * :doc:`sna/atom ` * :doc:`snad/atom ` * :doc:`snav/atom ` + * :doc:`sph/e/atom ` + * :doc:`sph/rho/atom ` + * :doc:`sph/t/atom ` * :doc:`spin ` * :doc:`stress/atom ` * :doc:`stress/mop ` diff --git a/doc/src/Commands_fix.rst b/doc/src/Commands_fix.rst index ce7cade0f6..8860a75e5e 100644 --- a/doc/src/Commands_fix.rst +++ b/doc/src/Commands_fix.rst @@ -94,9 +94,7 @@ OPT. * :doc:`lb/viscous ` * :doc:`lineforce ` * :doc:`manifoldforce ` - * :doc:`meso ` * :doc:`meso/move ` - * :doc:`meso/stationary ` * :doc:`momentum (k) ` * :doc:`move ` * :doc:`mscg ` @@ -201,6 +199,8 @@ OPT. * :doc:`smd/move_tri_surf ` * :doc:`smd/setvel ` * :doc:`smd/wall_surface ` + * :doc:`sph ` + * :doc:`sph/stationary ` * :doc:`spring ` * :doc:`spring/chunk ` * :doc:`spring/rg ` diff --git a/doc/src/Modify_atom.rst b/doc/src/Modify_atom.rst index 83f57a3d3d..f207dd4f7f 100644 --- a/doc/src/Modify_atom.rst +++ b/doc/src/Modify_atom.rst @@ -38,31 +38,32 @@ but the last 2 strings you do not need to specify any of (id,type,x,v,f). Those are included automatically as needed in the other strings. -+-------------------------+--------------------------------------------------------------------------------+ -| fields_grow | full list of properties which is allocated and stored | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_copy | list of properties to copy atoms are rearranged on-processor | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_comm | list of properties communicated to ghost atoms every step | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_comm_vel | additional properties communicated if :doc:`comm_modify vel ` is used | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_reverse | list of properties summed from ghost atoms every step | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_border | list of properties communicated with ghost atoms every reneighboring step | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_border_vel | additional properties communicated if :doc:`comm_modify vel ` is used | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_exchange | list of properties communicated when an atom migrates to another processor | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_restart | list of properties written/read to/from a restart file | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_create | list of properties defined when an atom is created by :doc:`create_atoms ` | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_data_atom | list of properties (in order) in the Atoms section of a data file, as read by :doc:`read_data ` | -+-------------------------+--------------------------------------------------------------------------------+ -| fields_data_vel | list of properties (in order) in the Velocities section of a data file, as read by :doc:`read_data ` | -+-------------------------+--------------------------------------------------------------------------------+ +.. list-table:: + + * - fields_grow + - full list of properties which is allocated and stored + * - fields_copy + - list of properties to copy atoms are rearranged on-processor + * - fields_comm + - list of properties communicated to ghost atoms every step + * - fields_comm_vel + - additional properties communicated if :doc:`comm_modify vel ` is used + * - fields_reverse + - list of properties summed from ghost atoms every step + * - fields_border + - list of properties communicated with ghost atoms every reneighboring step + * - fields_border_vel + - additional properties communicated if :doc:`comm_modify vel ` is used + * - fields_exchange + - list of properties communicated when an atom migrates to another processor + * - fields_restart + - list of properties written/read to/from a restart file + * - fields_create + - list of properties defined when an atom is created by :doc:`create_atoms ` + * - fields_data_atom + - list of properties (in order) in the Atoms section of a data file, as read by :doc:`read_data ` + * - fields_data_vel + - list of properties (in order) in the Velocities section of a data file, as read by :doc:`read_data ` In these strings you can list variable names which LAMMPS already defines (in some other atom style), or you can create new variable