remove whitespace
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@ -65,7 +65,6 @@ PairSNAP::~PairSNAP()
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memory->destroy(beta);
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memory->destroy(bispectrum);
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delete snaptr;
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if (allocated) {
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@ -180,21 +179,15 @@ void PairSNAP::compute(int eflag, int vflag)
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snaptr->compute_deidrj(fij);
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// scaling
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fij[0] *= scale[itype][itype];
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fij[1] *= scale[itype][itype];
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fij[2] *= scale[itype][itype];
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f[i][0] += fij[0];
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f[i][1] += fij[1];
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f[i][2] += fij[2];
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f[j][0] -= fij[0];
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f[j][1] -= fij[1];
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f[j][2] -= fij[2];
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f[i][0] += fij[0] * scale[itype][itype];
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f[i][1] += fij[1] * scale[itype][itype];
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f[i][2] += fij[2] * scale[itype][itype];
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f[j][0] -= fij[0] * scale[itype][itype];
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f[j][1] -= fij[1] * scale[itype][itype];
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f[j][2] -= fij[2] * scale[itype][itype];
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// tally per-atom virial contribution
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if (vflag)
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ev_tally_xyz(i,j,nlocal,newton_pair,0.0,0.0,
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fij[0],fij[1],fij[2],
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@ -209,7 +202,7 @@ void PairSNAP::compute(int eflag, int vflag)
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// evdwl = energy of atom I, sum over coeffs_k * Bi_k
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double* coeffi = coeffelem[ielem];
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evdwl = coeffi[0] ;
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evdwl = coeffi[0];
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// snaptr->copy_bi2bvec();
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// E = beta.B + 0.5*B^t.alpha.B
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@ -257,18 +250,18 @@ void PairSNAP::compute_beta()
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double* coeffi = coeffelem[ielem];
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for (int icoeff = 0; icoeff < ncoeff; icoeff++)
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beta[ii][icoeff] = coeffi[icoeff+1] ;
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beta[ii][icoeff] = coeffi[icoeff+1];
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if (quadraticflag) {
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int k = ncoeff+1;
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for (int icoeff = 0; icoeff < ncoeff; icoeff++) {
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double bveci = bispectrum[ii][icoeff];
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beta[ii][icoeff] += coeffi[k] * bveci ;
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beta[ii][icoeff] += coeffi[k]*bveci;
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k++;
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for (int jcoeff = icoeff+1; jcoeff < ncoeff; jcoeff++) {
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double bvecj = bispectrum[ii][jcoeff];
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beta[ii][icoeff] += coeffi[k] * bvecj ;
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beta[ii][jcoeff] += coeffi[k] * bveci ;
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beta[ii][icoeff] += coeffi[k]*bvecj;
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beta[ii][jcoeff] += coeffi[k]*bveci;
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k++;
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}
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}
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@ -385,7 +378,6 @@ void PairSNAP::settings(int narg, char ** /* arg */)
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void PairSNAP::coeff(int narg, char **arg)
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{
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if (!allocated) allocate();
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if (narg != 4 + atom->ntypes) error->all(FLERR,"Incorrect args for pair coefficients");
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map_element2type(narg-4,arg+4);
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@ -394,8 +386,6 @@ void PairSNAP::coeff(int narg, char **arg)
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read_files(arg[2],arg[3]);
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if (!quadraticflag)
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ncoeff = ncoeffall - 1;
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else {
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@ -741,7 +731,6 @@ double PairSNAP::memory_usage()
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return bytes;
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}
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void *PairSNAP::extract(const char *str, int &dim)
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{
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dim = 2;
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