diff --git a/doc/src/Howto_body.rst b/doc/src/Howto_body.rst index 80bed7d4c6..19ae10b9a0 100644 --- a/doc/src/Howto_body.rst +++ b/doc/src/Howto_body.rst @@ -167,7 +167,7 @@ sub-particle displacements should reflect the fact the body is defined withing a general triclinic box with edge vectors **A**,**B**,**C**. LAMMPS will rotate the box to convert it to a restricted triclinic box. This operation will also rotate the orientation of the body -particles. See the :doc:`Howto triclinic ` doc page +particles. See the :doc:`Howto triclinic ` doc page for more details. The :doc:`pair_style body/nparticle ` command can be used @@ -288,7 +288,7 @@ defined withing a general triclinic box with edge vectors **A**,**B**,**C**. LAMMPS will rotate the box to convert it to a restricted triclinic box. This operation will also rotate the orientation of the body particles. See the :doc:`Howto triclinic -` doc page for more details. +` doc page for more details. The :doc:`pair_style body/rounded/polygon ` command can be used with this body style to compute body/body @@ -463,7 +463,7 @@ defined withing a general triclinic box with edge vectors **A**,**B**,**C**. LAMMPS will rotate the box to convert it to a restricted triclinic box. This operation will also rotate the orientation of the body particles. See the :doc:`Howto triclinic -` doc page for more details. +` doc page for more details. The :doc:`pair_style body/rounded/polhedron ` command can be used with this body diff --git a/doc/src/Howto_triclinic.rst b/doc/src/Howto_triclinic.rst index 1461f32187..d98a4eca42 100644 --- a/doc/src/Howto_triclinic.rst +++ b/doc/src/Howto_triclinic.rst @@ -17,9 +17,9 @@ is created by one of these commands: * :doc:`read_dump ` Internally, LAMMPS defines box size parameters lx,ly,lz where lx = -xhi-xlo, and similarly in the y and z dimensions. The 6 parameters, -as well as lx,ly,lz, can be output via the :doc:`thermo_style custom -` command. See the :doc:'Howto 2d ` doc page +xhi-xlo, and similarly in the y and z dimensions. The 6 parameters, as +well as lx,ly,lz, can be output via the :doc:`thermo_style custom +` command. See the :doc:`Howto 2d ` doc page for info on how zlo and zhi are defined for 2d simulations. ---------- @@ -30,7 +30,7 @@ Triclinic simulation boxes LAMMPS also allows simulations to be performed using triclinic (non-orthogonal) simulation boxes shaped as a 3d parallelepiped with triclinic symmetry. For 2d simulations a triclinic simulation box is -effectively a parallelogram; see the :doc:'Howto 2d ` doc +effectively a parallelogram; see the :doc:`Howto 2d ` doc page for details. One use of triclinic simulation boxes is to model solid-state crystals diff --git a/doc/src/dump.rst b/doc/src/dump.rst index 8cba1d760b..bfb1cb1556 100644 --- a/doc/src/dump.rst +++ b/doc/src/dump.rst @@ -288,7 +288,7 @@ with LAMMPS or third-party tools can read this format, as does the For all these styles, the dimensions of the simulation box are included in each snapshot. The simulation box in LAMMPS can be defined in one of 3 ways: orthogonal, restricted triclinic, and -general triclinic. See the :doc:`Howto triclinic ` +general triclinic. See the :doc:`Howto triclinic ` doc page for a detailed description of all 3 options. For an orthogonal simulation box the box information is formatted as: @@ -668,7 +668,7 @@ General triclinic simulation box output for the *atom* and *custom* styles: As mentioned above, the simulation box can be defined as a general triclinic box, which means that 3 arbitrary box edge vectors **A**, **B**, **C** can be specified. See the :doc:`Howto triclinic -` doc page for a detailed description of general +` doc page for a detailed description of general triclinic boxes. This option is provided as a convenience for users who may be diff --git a/doc/src/lattice.rst b/doc/src/lattice.rst index 235b8b30da..ae4b9267a6 100644 --- a/doc/src/lattice.rst +++ b/doc/src/lattice.rst @@ -200,7 +200,7 @@ the Z direction. The *triclinic/general* option specifies that the defined lattice is for use with a general triclinic simulation box, as opposed to an orthogonal or restricted triclinic box. The :doc:`Howto triclinic -` doc page explains all 3 kinds of simluation boxes +` doc page explains all 3 kinds of simluation boxes LAMMPS supports. If this option is specified, a *custom* lattice style must be used. diff --git a/doc/src/read_data.rst b/doc/src/read_data.rst index dd028ec23e..9bea4e9df7 100644 --- a/doc/src/read_data.rst +++ b/doc/src/read_data.rst @@ -923,7 +923,7 @@ zero. data file in the direction of the **A** edge vector. Likewise the (x0,y0,z0) per-atom strain-free coordinates should be inside the general triclinic simulation box as explained in the note above. - See the :doc:`Howto triclinic ` doc page for more + See the :doc:`Howto triclinic ` doc page for more details. The atom-ID is used to identify the atom throughout the simulation and @@ -1675,7 +1675,7 @@ Wz are in units of angular velocity (radians/time). If the data file defines a general triclinic box, then each of the 3 vectors (translational velocity, angular momentum, angular velocity) should be specified for the rotated coordinate axes of the general -triclinic box. See the :doc:`Howto triclinic ` doc +triclinic box. See the :doc:`Howto triclinic ` doc page for more details. For atom_style hybrid, following the 4 initial values (ID,vx,vy,vz),