support setting global virial for fix external from python
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@ -1795,20 +1795,38 @@ class lammps(object):
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# -------------------------------------------------------------------------
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def fix_external_set_energy_global(self, fix_id, eng):
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"""Get access to that array with per-atom forces of a fix external instance with a given fix ID.
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"""Set the global energy contribution for a fix external instance with the given ID.
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This is a wrapper around the :cpp:func:`lammps_fix_external_get_force` function
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This is a wrapper around the :cpp:func:`lammps_fix_external_set_energy_global` function
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of the C-library interface.
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:param fix_id: Fix-ID of a fix external instance
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:type: string
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:param eng: potential energy to be added by fix external
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:param eng: potential energy value to be added by fix external
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:type: float
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"""
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with ExceptionCheck(self):
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return self.lib.lammps_fix_external_set_energy_global(self.lmp, fix_id.encode(), eng)
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# -------------------------------------------------------------------------
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def fix_external_set_virial_global(self, fix_id, virial):
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"""Set the global virial contribution for a fix external instance with the given ID.
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This is a wrapper around the :cpp:func:`lammps_fix_external_set_virial_global` function
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of the C-library interface.
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:param fix_id: Fix-ID of a fix external instance
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:type: string
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:param eng: list of 6 floating point numbers with the virial to be added by fix external
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:type: float
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"""
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cvirial = (6*c_double)(*virial)
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with ExceptionCheck(self):
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return self.lib.lammps_fix_external_set_virial_global(self.lmp, fix_id.encode(), cvirial)
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# -------------------------------------------------------------------------
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def fix_external_set_vector_length(self, fix_id, length):
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"""Set the vector length for a global vector stored with fix external for analysis
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@ -5103,7 +5103,7 @@ void lammps_fix_external_set_vector_length(void *handle, const char *id, int len
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END_CAPTURE
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}
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/** Store global vector for a fix external instance with the given ID.
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/** Store a global vector value for a fix external instance with the given ID.
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\verbatim embed:rst
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@ -4,6 +4,8 @@ from lammps import lammps, LMP_STYLE_GLOBAL, LMP_TYPE_VECTOR
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# add timestep dependent force
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def callback_one(lmp, ntimestep, nlocal, tag, x, f):
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virial = [1.0, 1.0, 1.0, 0.0, 0.0, 0.0]
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lmp.fix_external_set_virial_global("ext",virial)
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for i in range(nlocal):
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f[i][0] = float(ntimestep)
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f[i][1] = float(ntimestep)
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@ -49,6 +51,7 @@ class PythonExternal(unittest.TestCase):
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lmp.command("run 10 post no")
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self.assertAlmostEqual(lmp.get_thermo("temp"),1.0/30.0,14)
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self.assertAlmostEqual(lmp.get_thermo("pe"),1.0/8.0,14)
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self.assertAlmostEqual(lmp.get_thermo("press"),0.15416666666666667,14)
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val = 0.0
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for i in range(0,6):
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val += lmp.extract_fix("ext",LMP_STYLE_GLOBAL,LMP_TYPE_VECTOR,nrow=i)
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