support setting global virial for fix external from python

This commit is contained in:
Axel Kohlmeyer
2021-07-17 07:38:53 -04:00
parent fa654f2270
commit f251bc544f
3 changed files with 25 additions and 4 deletions

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@ -1795,20 +1795,38 @@ class lammps(object):
# -------------------------------------------------------------------------
def fix_external_set_energy_global(self, fix_id, eng):
"""Get access to that array with per-atom forces of a fix external instance with a given fix ID.
"""Set the global energy contribution for a fix external instance with the given ID.
This is a wrapper around the :cpp:func:`lammps_fix_external_get_force` function
This is a wrapper around the :cpp:func:`lammps_fix_external_set_energy_global` function
of the C-library interface.
:param fix_id: Fix-ID of a fix external instance
:type: string
:param eng: potential energy to be added by fix external
:param eng: potential energy value to be added by fix external
:type: float
"""
with ExceptionCheck(self):
return self.lib.lammps_fix_external_set_energy_global(self.lmp, fix_id.encode(), eng)
# -------------------------------------------------------------------------
def fix_external_set_virial_global(self, fix_id, virial):
"""Set the global virial contribution for a fix external instance with the given ID.
This is a wrapper around the :cpp:func:`lammps_fix_external_set_virial_global` function
of the C-library interface.
:param fix_id: Fix-ID of a fix external instance
:type: string
:param eng: list of 6 floating point numbers with the virial to be added by fix external
:type: float
"""
cvirial = (6*c_double)(*virial)
with ExceptionCheck(self):
return self.lib.lammps_fix_external_set_virial_global(self.lmp, fix_id.encode(), cvirial)
# -------------------------------------------------------------------------
def fix_external_set_vector_length(self, fix_id, length):
"""Set the vector length for a global vector stored with fix external for analysis

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@ -5103,7 +5103,7 @@ void lammps_fix_external_set_vector_length(void *handle, const char *id, int len
END_CAPTURE
}
/** Store global vector for a fix external instance with the given ID.
/** Store a global vector value for a fix external instance with the given ID.
\verbatim embed:rst

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@ -4,6 +4,8 @@ from lammps import lammps, LMP_STYLE_GLOBAL, LMP_TYPE_VECTOR
# add timestep dependent force
def callback_one(lmp, ntimestep, nlocal, tag, x, f):
virial = [1.0, 1.0, 1.0, 0.0, 0.0, 0.0]
lmp.fix_external_set_virial_global("ext",virial)
for i in range(nlocal):
f[i][0] = float(ntimestep)
f[i][1] = float(ntimestep)
@ -49,6 +51,7 @@ class PythonExternal(unittest.TestCase):
lmp.command("run 10 post no")
self.assertAlmostEqual(lmp.get_thermo("temp"),1.0/30.0,14)
self.assertAlmostEqual(lmp.get_thermo("pe"),1.0/8.0,14)
self.assertAlmostEqual(lmp.get_thermo("press"),0.15416666666666667,14)
val = 0.0
for i in range(0,6):
val += lmp.extract_fix("ext",LMP_STYLE_GLOBAL,LMP_TYPE_VECTOR,nrow=i)