diff --git a/doc/fix_ipi.html b/doc/fix_ipi.html index 9ed4171937..1c76f7af28 100644 --- a/doc/fix_ipi.html +++ b/doc/fix_ipi.html @@ -87,8 +87,8 @@ environment. -
(IPI-CPC) Ceriotti, More and Manolopoulos, -Comp. Phys. Comm., 185, 1019–1026 (2014) +
(IPI-CPC) Ceriotti, More and Manolopoulos, Comp Phys Comm, 185, +1019-1026 (2014).
diff --git a/doc/fix_ipi.txt b/doc/fix_ipi.txt index 221d85fc81..c429869580 100644 --- a/doc/fix_ipi.txt +++ b/doc/fix_ipi.txt @@ -83,8 +83,8 @@ environment. :line :link(IPICPC) -[(IPI-CPC)] Ceriotti, More and Manolopoulos, -Comp. Phys. Comm., 185, 1019–1026 (2014) +[(IPI-CPC)] Ceriotti, More and Manolopoulos, Comp Phys Comm, 185, +1019-1026 (2014). :link(IPI) [(IPI)] diff --git a/doc/fix_pimd.html b/doc/fix_pimd.html index 713100ba0f..629d868319 100644 --- a/doc/fix_pimd.html +++ b/doc/fix_pimd.html @@ -33,7 +33,7 @@Examples:
-fix 1 all quantum method nmpimd fmass 1.0 sp 2.0 temp 300.0 nhc 4 +fix 1 all pimd method nmpimd fmass 1.0 sp 2.0 temp 300.0 nhc 4Description:
@@ -105,7 +105,7 @@ masses of beads, which can be used for the Partial Adiabatic CMD (Hone), or to be set as P, which results in the fictitious masses to be equal to the real particle masses. -The keyword sp is a scaling factor on Planck’s constant, which can +
The keyword sp is a scaling factor on Planck's constant, which can be useful for debugging or other purposes. The default value of 1.0 is appropriate for most situations.
@@ -165,31 +165,29 @@ and nhc = 2.
- - -(Feynman) R. Feynman and A. Hibbs, Chapter 7, Quantum Mechanics and -Path Integrals, McGraw-Hill, New York (1965). +
:link(Feynman) (Feynman) R. Feynman and A. Hibbs, Chapter 7, Quantum +Mechanics and Path Integrals, McGraw-Hill, New York (1965).
-(Tuckerman) M. Tuckerman and B. Berne, J Chem Phys, 99, 2796 (xxxx). +
(Tuckerman) M. Tuckerman and B. Berne, J Chem Phys, 99, 2796 (1993).
-(Cao1) J. Cao and B. Berne, J Chem Phys, 99, 2902 (xxxx). +
(Cao1) J. Cao and B. Berne, J Chem Phys, 99, 2902 (1993).
-(Cao2) J. Cao and G. Voth, J Chem Phys, 100, 5093 (xxxx). +
(Cao2) J. Cao and G. Voth, J Chem Phys, 100, 5093 (1994).
(Hone) T. Hone, P. Rossky, G. Voth, J Chem Phys, 124, -154103 (xxxx). +154103 (2006).
(Calhoun) A. Calhoun, M. Pavese, G. Voth, Chem Phys Letters, 262, -415 (xxxx). +415 (1996).