Fixed issues with detecting the basename of input (e.g. in.min.box) and the log file
This commit is contained in:
@ -224,8 +224,10 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
|
||||
logger.info(str_t)
|
||||
print(str_t)
|
||||
|
||||
# check if a reference log file exists in the current folder: log.DDMMMYY.basename.[nprocs]
|
||||
basename = input_test.replace('in.','')
|
||||
# check if a reference log file exists in the current folder: log.DDMMMYY.basename.g++.[nprocs]
|
||||
#basename = input_test.replace('in.','')
|
||||
# assuming that input file names start with "in."
|
||||
basename = input_test[3:]
|
||||
logfile_exist = False
|
||||
|
||||
# if there are multiple log files for different number of procs, pick the maximum number
|
||||
@ -236,10 +238,10 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
|
||||
|
||||
max_np = 1
|
||||
for file in logfile_list:
|
||||
# looks for pattern log.{date}.{basename}.g++.{nprocs}
|
||||
# looks for pattern log.{date}.{basename}.g++.{nprocs}: log.[date].min.box.g++.* vs log.[date].min.g++.*
|
||||
# get the date from the log files
|
||||
date = file.split('.',2)[1]
|
||||
pattern = f'log.{date}.{basename}.*'
|
||||
pattern = f'log.{date}.{basename}.g++.*'
|
||||
if fnmatch.fnmatch(file, pattern):
|
||||
p = file.rsplit('.', 1)
|
||||
if p[1].isnumeric():
|
||||
@ -395,7 +397,7 @@ def iterate(lmp_binary, input_folder, input_list, config, results, progress_file
|
||||
# check if the number of runs matches with that in the reference log file
|
||||
if num_runs != num_runs_ref:
|
||||
logger.info(f" ERROR: Number of runs in log.lammps ({num_runs}) is different from that in the reference log ({num_runs_ref})."
|
||||
"Check README in the folder, possibly due to the mpirun command.")
|
||||
" Check README in the folder, possibly due to using mpirun with partitions or parsing the wrong reference log file.")
|
||||
result.status = "error, incomplete runs"
|
||||
results.append(result)
|
||||
progress.write(f"{input}: {{ folder: {input_folder}, status: \"{result.status}\" }}\n")
|
||||
|
||||
Reference in New Issue
Block a user