spelling fixes and updates for the manual

doc/src/Build_basics.rst

@@ -203,7 +203,7 @@ LAMMPS.
       check if the detected or selected compiler is compatible with the
       C++ support requirements of LAMMPS and stop with an error, if this
       is not the case.  A C++11 compatible compiler is currently
-      required, but a transition to require C++17 is in progess and
+      required, but a transition to require C++17 is in progress and
       planned to be completed in Summer 2025. Currently, setting
       ``-DLAMMPS_CXX11=yes`` is required when configuring with CMake while
       using a C++11 compatible compiler that does not support C++17,
@@ -329,7 +329,7 @@ LAMMPS.
          either as a binary package or through compiling from source.
 
       While a C++11 compatible compiler is currently sufficient to compile
-      LAMMPS, a transition to require C++17 is in progess and planned to
+      LAMMPS, a transition to require C++17 is in progress and planned to
       be completed in Summer 2025. Currently, setting ``-DLAMMPS_CXX11``
       in the ``LMP_INC =`` line in the machine makefile is required when
       using a C++11 compatible compiler that does not support C++17.

doc/src/fix_wall_gran.rst

@@ -248,11 +248,11 @@ listed in the following table.
 |     8 | Radius :math:`r` of atom                           | distance units |
 +-------+----------------------------------------------------+----------------+
 
-If a granular submodel calculates additional contact information (e.g. the
-heat submodels calculate the amount of heat exchanged), these quantities
+If a granular sub-model calculates additional contact information (e.g. the
+heat sub-models calculate the amount of heat exchanged), these quantities
 are appended to the end of this array. First, any extra values from the
-normal submodel are appended followed by the damping, tangential, rolling,
-twisting, then heat models. See the descriptions of granular submodels in
+normal sub-model are appended followed by the damping, tangential, rolling,
+twisting, then heat models. See the descriptions of granular sub-models in
 the :doc:`pair granular <pair_granular>` page for information on any extra
 quantities.
 

doc/src/fix_wall_gran_region.rst

@@ -269,11 +269,11 @@ listed in the following table.
 |     8 | Radius :math:`r` of atom                           | distance units |
 +-------+----------------------------------------------------+----------------+
 
-If a granular submodel calculates additional contact information (e.g. the
-heat submodels calculate the amount of heat exchanged), these quantities
+If a granular sub-model calculates additional contact information (e.g. the
+heat sub-models calculate the amount of heat exchanged), these quantities
 are appended to the end of this array. First, any extra values from the
-normal submodel are appended followed by the damping, tangential, rolling,
-twisting, then heat models. See the descriptions of granular submodels in
+normal sub-model are appended followed by the damping, tangential, rolling,
+twisting, then heat models. See the descriptions of granular sub-models in
 the :doc:`pair granular <pair_granular>` page for information on any extra
 quantities.
 

doc/src/pair_granular.rst

@@ -258,7 +258,7 @@ in damping model.
 
 The definition of multiple *mdr* models in the *pair_style* is currently not
 supported. Similarly, the *mdr* model cannot be combined with a different normal
-model in the *pair_style*. Physically this means that only one homogenous
+model in the *pair_style*. Physically this means that only one homogeneous
 collection of particles governed by a single *mdr* model is allowed.
 
 The *mdr* model currently only supports *fix wall/gran/region*, not
@@ -303,6 +303,7 @@ radius in the *mdr* model, the keyword/arg pair *cutoff radius* must be specifie
    simulation involving 200 particles named *in.tableting.200*.
    The second is a triaxial compaction simulation involving 12
    particles named *in.triaxial.compaction.12*.
+
 ----------
 
 In addition, the normal force is augmented by a damping term of the
@@ -941,16 +942,16 @@ particle I. The next entry (8) is the magnitude of the rolling torque.
 The next entry (9) is the magnitude of the twisting torque acting
 about the vector connecting the two particle centers.
 The next 3 (10-12) are the components of the vector connecting
-the centers of the two particles (x_I - x_J). If a granular submodel
-calculates additional contact information (e.g. the heat submodels
+the centers of the two particles (x_I - x_J). If a granular sub-model
+calculates additional contact information (e.g. the heat sub-models
 calculate the amount of heat exchanged), these quantities are appended
-to the end of this list. First, any extra values from the normal submodel
+to the end of this list. First, any extra values from the normal sub-model
 are appended followed by the damping, tangential, rolling, twisting, then
-heat models. See the descriptions of specific granular submodels above
+heat models. See the descriptions of specific granular sub-models above
 for information on any extra quantities. If two or more models are
 defined by pair coefficients, the size of the array is set by the
 maximum number of extra quantities in a model but the order of quantities
-is determined by each model's specific set of submodels. Any unused
+is determined by each model's specific set of sub-models. Any unused
 quantities are zeroed.
 
 These extra quantities can be accessed by the :doc:`compute pair/local <compute_pair_local>` command, as *p1*, *p2*, ...,
@@ -1046,7 +1047,7 @@ a bulk elastic response. Journal of the Mechanics and Physics of Solids,
 **(Zunker et al, 2025)** Zunker, W., Dunatunga, S., Thakur, S.,
 Tang, P., & Kamrin, K. (2025). Experimentally validated DEM for large
 deformation powder compaction: mechanically-derived contact model and
-screening of non-physical contacts. engrXiv.
+screening of non-physical contacts.
 
 .. _Luding2008:
 

doc/utils/sphinx-config/false_positives.txt

@@ -1583,6 +1583,7 @@ Impropers
 imulator
 includelink
 incompressible
+incompressibility
 incrementing
 indenter
 indenters
@@ -1762,6 +1763,7 @@ Kadiri
 Kai
 Kalia
 Kamberaj
+Kamrin
 Kantorovich
 Kapfer
 Kapil
@@ -3731,6 +3733,7 @@ tgnpt
 tgnvt
 th
 Thakkar
+Thakur
 Thaokar
 thb
 thei
@@ -3831,6 +3834,7 @@ Tref
 Tretyakov
 tri
 triangleflag
+triaxial
 Tribello
 triclinic
 Triclinic