git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5281 f3b2605a-c512-4ea7-a41b-209d697bcdaa

doc/fix_ave_atom.html

@@ -76,12 +76,13 @@ per-atom vectors.
 
 <P>The <I>Nevery</I>, <I>Nrepeat</I>, and <I>Nfreq</I> arguments specify on what
 timesteps the input values will be used in order to contribute to the
-average.  The final averaged quantities are generated every <I>Nfreq</I>
+average.  The final averaged quantities are generated on timesteps
-timesteps.  The average is over <I>Nrepeat</I> quantities, computed in the
+that are a multiple of <I>Nfreq</I>.  The average is over <I>Nrepeat</I>
-preceding portion of the simulation every <I>Nevery</I> timesteps.  <I>Nfreq</I>
+quantities, computed in the preceding portion of the simulation every
-must be a multiple of <I>Nevery</I> and <I>Nevery</I> must be non-zero even if
+<I>Nevery</I> timesteps.  <I>Nfreq</I> must be a multiple of <I>Nevery</I> and
-<I>Nrepeat</I> is 1.  Also, the timesteps contributing to the average value
+<I>Nevery</I> must be non-zero even if <I>Nrepeat</I> is 1.  Also, the timesteps
-cannot overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is required.
+contributing to the average value cannot overlap, i.e. Nfreq >
+(Nrepeat-1)*Nevery is required.
 </P>
 <P>For example, if Nevery=2, Nrepeat=6, and Nfreq=100, then values on
 timesteps 90,92,94,96,98,100 will be used to compute the final average

doc/fix_ave_atom.txt

@@ -66,12 +66,13 @@ Each per-atom value of each input vector is averaged independently.
 
 The {Nevery}, {Nrepeat}, and {Nfreq} arguments specify on what
 timesteps the input values will be used in order to contribute to the
-average.  The final averaged quantities are generated every {Nfreq}
+average.  The final averaged quantities are generated on timesteps
-timesteps.  The average is over {Nrepeat} quantities, computed in the
+that are a multiple of {Nfreq}.  The average is over {Nrepeat}
-preceding portion of the simulation every {Nevery} timesteps.  {Nfreq}
+quantities, computed in the preceding portion of the simulation every
-must be a multiple of {Nevery} and {Nevery} must be non-zero even if
+{Nevery} timesteps.  {Nfreq} must be a multiple of {Nevery} and
-{Nrepeat} is 1.  Also, the timesteps contributing to the average value
+{Nevery} must be non-zero even if {Nrepeat} is 1.  Also, the timesteps
-cannot overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is required.
+contributing to the average value cannot overlap, i.e. Nfreq >
+(Nrepeat-1)*Nevery is required.
 
 For example, if Nevery=2, Nrepeat=6, and Nfreq=100, then values on
 timesteps 90,92,94,96,98,100 will be used to compute the final average

doc/fix_ave_correlate.html

@@ -113,11 +113,12 @@ correlations between input values are calculated is determined by the
 <P>The <I>Nevery</I>, <I>Nrepeat</I>, and <I>Nfreq</I> arguments specify on what
 timesteps the input values will be used to calculate correlation data.
 The input values are sampled every <I>Nevery</I> timesteps.  The
-correlation data for the preceding samples is computed every <I>Nfreq</I>
+correlation data for the preceding samples is computed on timesteps
-timesteps.  Consider a set of samples from some initial time up to an
+that are a multiple of <I>Nfreq</I>.  Consider a set of samples from some
-output timestep.  The initial time could be the beginning of the
+initial time up to an output timestep.  The initial time could be the
-simulation or the last output time; see the <I>ave</I> keyword for options.
+beginning of the simulation or the last output time; see the <I>ave</I>
-For the set of samples, the correlation value Cij is calculated as:
+keyword for options.  For the set of samples, the correlation value
+Cij is calculated as:
 </P>
 <PRE>Cij(delta) = ave(Vi(t)*Vj(t+delta)) 
 </PRE>

doc/fix_ave_correlate.txt

@@ -100,11 +100,12 @@ correlations between input values are calculated is determined by the
 The {Nevery}, {Nrepeat}, and {Nfreq} arguments specify on what
 timesteps the input values will be used to calculate correlation data.
 The input values are sampled every {Nevery} timesteps.  The
-correlation data for the preceding samples is computed every {Nfreq}
+correlation data for the preceding samples is computed on timesteps
-timesteps.  Consider a set of samples from some initial time up to an
+that are a multiple of {Nfreq}.  Consider a set of samples from some
-output timestep.  The initial time could be the beginning of the
+initial time up to an output timestep.  The initial time could be the
-simulation or the last output time; see the {ave} keyword for options.
+beginning of the simulation or the last output time; see the {ave}
-For the set of samples, the correlation value Cij is calculated as:
+keyword for options.  For the set of samples, the correlation value
+Cij is calculated as:
 
 Cij(delta) = ave(Vi(t)*Vj(t+delta)) :pre
 

doc/fix_ave_histo.html

@@ -120,12 +120,13 @@ details on the format of the output of this fix.
 
 <P>The <I>Nevery</I>, <I>Nrepeat</I>, and <I>Nfreq</I> arguments specify on what
 timesteps the input values will be used in order to contribute to the
-histogram.  The final histogram is generated every <I>Nfreq</I> timesteps.
+histogram.  The final histogram is generated on timesteps that are
-It is averaged over <I>Nrepeat</I> histograms, computed in the preceding
+multiple of <I>Nfreq</I>.  It is averaged over <I>Nrepeat</I> histograms,
-portion of the simulation every <I>Nevery</I> timesteps.  <I>Nfreq</I> must be a
+computed in the preceding portion of the simulation every <I>Nevery</I>
-multiple of <I>Nevery</I> and <I>Nevery</I> must be non-zero even if <I>Nrepeat</I>
+timesteps.  <I>Nfreq</I> must be a multiple of <I>Nevery</I> and <I>Nevery</I> must
-is 1.  Also, the timesteps contributing to the histogram cannot
+be non-zero even if <I>Nrepeat</I> is 1.  Also, the timesteps contributing
-overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is required.
+to the histogram cannot overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is
+required.
 </P>
 <P>For example, if Nevery=2, Nrepeat=6, and Nfreq=100, then input values
 on timesteps 90,92,94,96,98,100 will be used to compute the final

doc/fix_ave_histo.txt

@@ -108,12 +108,13 @@ details on the format of the output of this fix.
 
 The {Nevery}, {Nrepeat}, and {Nfreq} arguments specify on what
 timesteps the input values will be used in order to contribute to the
-histogram.  The final histogram is generated every {Nfreq} timesteps.
+histogram.  The final histogram is generated on timesteps that are
-It is averaged over {Nrepeat} histograms, computed in the preceding
+multiple of {Nfreq}.  It is averaged over {Nrepeat} histograms,
-portion of the simulation every {Nevery} timesteps.  {Nfreq} must be a
+computed in the preceding portion of the simulation every {Nevery}
-multiple of {Nevery} and {Nevery} must be non-zero even if {Nrepeat}
+timesteps.  {Nfreq} must be a multiple of {Nevery} and {Nevery} must
-is 1.  Also, the timesteps contributing to the histogram cannot
+be non-zero even if {Nrepeat} is 1.  Also, the timesteps contributing
-overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is required.
+to the histogram cannot overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is
+required.
 
 For example, if Nevery=2, Nrepeat=6, and Nfreq=100, then input values
 on timesteps 90,92,94,96,98,100 will be used to compute the final

doc/fix_ave_spatial.html

@@ -124,13 +124,13 @@ so be careful to use reasonable numbers of bins.
 
 <P>The <I>Nevery</I>, <I>Nrepeat</I>, and <I>Nfreq</I> arguments specify on what
 timesteps the input values will be used to bin them and contribute to
-the average.  The final averaged quantities are generated every
+the average.  The final averaged quantities are generated on timesteps
-<I>Nfreq</I> timesteps.  The average is over <I>Nrepeat</I> quantities, computed
+that are a multiples of <I>Nfreq</I>.  The average is over <I>Nrepeat</I>
-in the preceding portion of the simulation every <I>Nevery</I> timesteps.
+quantities, computed in the preceding portion of the simulation every
-<I>Nfreq</I> must be a multiple of <I>Nevery</I> and <I>Nevery</I> must be non-zero
+<I>Nevery</I> timesteps.  <I>Nfreq</I> must be a multiple of <I>Nevery</I> and
-even if <I>Nrepeat</I> is 1.  Also, the timesteps contributing to the
+<I>Nevery</I> must be non-zero even if <I>Nrepeat</I> is 1.  Also, the timesteps
-average value cannot overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is
+contributing to the average value cannot overlap, i.e. Nfreq >
-required.
+(Nrepeat-1)*Nevery is required.
 </P>
 <P>For example, if Nevery=2, Nrepeat=6, and Nfreq=100, then values on
 timesteps 90,92,94,96,98,100 will be used to compute the final average

doc/fix_ave_spatial.txt

@@ -109,13 +109,13 @@ so be careful to use reasonable numbers of bins.
 
 The {Nevery}, {Nrepeat}, and {Nfreq} arguments specify on what
 timesteps the input values will be used to bin them and contribute to
-the average.  The final averaged quantities are generated every
+the average.  The final averaged quantities are generated on timesteps
-{Nfreq} timesteps.  The average is over {Nrepeat} quantities, computed
+that are a multiples of {Nfreq}.  The average is over {Nrepeat}
-in the preceding portion of the simulation every {Nevery} timesteps.
+quantities, computed in the preceding portion of the simulation every
-{Nfreq} must be a multiple of {Nevery} and {Nevery} must be non-zero
+{Nevery} timesteps.  {Nfreq} must be a multiple of {Nevery} and
-even if {Nrepeat} is 1.  Also, the timesteps contributing to the
+{Nevery} must be non-zero even if {Nrepeat} is 1.  Also, the timesteps
-average value cannot overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is
+contributing to the average value cannot overlap, i.e. Nfreq >
-required.
+(Nrepeat-1)*Nevery is required.
 
 For example, if Nevery=2, Nrepeat=6, and Nfreq=100, then values on
 timesteps 90,92,94,96,98,100 will be used to compute the final average

doc/fix_ave_time.html

@@ -123,12 +123,13 @@ fix 2 all ave/time 100 1 100 c_myRDF[1] c_myRDF[2] c_myRDF[3] file tmp2.rdf mode
 
 <P>The <I>Nevery</I>, <I>Nrepeat</I>, and <I>Nfreq</I> arguments specify on what
 timesteps the input values will be used in order to contribute to the
-average.  The final averaged quantities are generated every <I>Nfreq</I>
+average.  The final averaged quantities are generated on timesteps
-timesteps.  The average is over <I>Nrepeat</I> quantities, computed in the
+that are a mlutiple of <I>Nfreq</I>.  The average is over <I>Nrepeat</I>
-preceding portion of the simulation every <I>Nevery</I> timesteps.  <I>Nfreq</I>
+quantities, computed in the preceding portion of the simulation every
-must be a multiple of <I>Nevery</I> and <I>Nevery</I> must be non-zero even if
+<I>Nevery</I> timesteps.  <I>Nfreq</I> must be a multiple of <I>Nevery</I> and
-<I>Nrepeat</I> is 1.  Also, the timesteps contributing to the average value
+<I>Nevery</I> must be non-zero even if <I>Nrepeat</I> is 1.  Also, the timesteps
-cannot overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is required.
+contributing to the average value cannot overlap, i.e. Nfreq >
+(Nrepeat-1)*Nevery is required.
 </P>
 <P>For example, if Nevery=2, Nrepeat=6, and Nfreq=100, then values on
 timesteps 90,92,94,96,98,100 will be used to compute the final average

doc/fix_ave_time.txt

@@ -110,12 +110,13 @@ fix 2 all ave/time 100 1 100 c_myRDF\[1\] c_myRDF\[2\] c_myRDF\[3\] file tmp2.rd
 
 The {Nevery}, {Nrepeat}, and {Nfreq} arguments specify on what
 timesteps the input values will be used in order to contribute to the
-average.  The final averaged quantities are generated every {Nfreq}
+average.  The final averaged quantities are generated on timesteps
-timesteps.  The average is over {Nrepeat} quantities, computed in the
+that are a mlutiple of {Nfreq}.  The average is over {Nrepeat}
-preceding portion of the simulation every {Nevery} timesteps.  {Nfreq}
+quantities, computed in the preceding portion of the simulation every
-must be a multiple of {Nevery} and {Nevery} must be non-zero even if
+{Nevery} timesteps.  {Nfreq} must be a multiple of {Nevery} and
-{Nrepeat} is 1.  Also, the timesteps contributing to the average value
+{Nevery} must be non-zero even if {Nrepeat} is 1.  Also, the timesteps
-cannot overlap, i.e. Nfreq > (Nrepeat-1)*Nevery is required.
+contributing to the average value cannot overlap, i.e. Nfreq >
+(Nrepeat-1)*Nevery is required.
 
 For example, if Nevery=2, Nrepeat=6, and Nfreq=100, then values on
 timesteps 90,92,94,96,98,100 will be used to compute the final average