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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5400 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2010-12-15 17:17:55 +00:00
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doc/Section_tools.html
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@ -63,6 +63,7 @@ own sub-directories with their own Makefiles.
<LI><A HREF = "#msi">msi2lmp</A>
<LI><A HREF = "#pymol">pymol_asphere</A>
<LI><A HREF = "#pythontools">python</A>
<LI><A HREF = "#reax">reax</A>
<LI><A HREF = "#restart">restart2data</A>
<LI><A HREF = "#thermo_extract">thermo_extract</A>
<LI><A HREF = "#vim">vim</A>
@ -345,7 +346,7 @@ examples directory within pymol_asphere for more information.
<H4><A NAME = "pythontools"></A>python tool
</H4>
<P>The python sub-directory contains several Python scripts
that perform common LAMMPS post-processing tasks, like
that perform common LAMMPS post-processing tasks, such as:
</P>
<UL><LI>extract thermodynamic info from a log file as columns of numbers
<LI>plot two columns of thermodynamic info from a log file using GnuPlot
@ -358,6 +359,17 @@ README for more info on Pizza.py and how to use these scripts.
</P>
<HR>
<H4><A NAME = "reax"></A>reax tool
</H4>
<P>The reax sub-directory contains stand-alond codes that can
post-process the output of the <A HREF = "fix_reax_bonds.html">fix reax/bonds</A>
command from a LAMMPS simulation using <A HREF = "pair_reax.html">ReaxFF</A>. See
the README.txt file for more info.
</P>
<P>These tools were written by Aidan Thompson at Sandia.
</P>
<HR>
<H4><A NAME = "restart"></A>restart2data tool
</H4>
<P>The file restart2data.cpp converts a binary LAMMPS restart file into