Auxiliary test methods for angles, dihedrals and impropers
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@ -38,6 +38,36 @@ class PythonGather(unittest.TestCase):
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else:
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return 0
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# angle data comparison
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def checkAngle(self, vals, atype, aatom1, aatom2, aatom3):
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set1 = {aatom1, aatom2, aatom3}
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set2 = {vals[1], vals[2], vals[3]}
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if len(set1.intersection(set2)) == 3:
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self.assertEqual(vals[0], atype)
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return 1
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else:
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return 0
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# dihedral data comparison
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def checkDihedral(self, vals, dtype, datom1, datom2, datom3, datom4):
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set1 = {datom1, datom2, datom3, datom4}
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set2 = {vals[1], vals[2], vals[3], vals[4]}
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if len(set1.intersection(set2)) == 4:
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self.assertEqual(vals[0], dtype)
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return 1
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else:
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return 0
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# improper data comparison
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def checkImproper(self, vals, itype, iatom1, iatom2, iatom3, iatom4):
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set1 = {iatom1, iatom2, iatom3, iatom4}
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set2 = {vals[1], vals[2], vals[3], vals[4]}
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if len(set1.intersection(set2)) == 4:
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self.assertEqual(vals[0], itype)
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return 1
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else:
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return 0
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##############################
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@unittest.skipIf(not has_full, "Gather_bonds test")
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def testGatherBond_newton_on(self):
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