update URLs from http:// to https://

src/USER-MISC/fix_filter_corotate.cpp

@@ -57,7 +57,7 @@ static const char cite_filter_corotate[] =
   " Doi = {https://doi.org/10.1016/j.jcp.2016.12.024},\n"
   " ISSN = {0021-9991},\n"
   " Keywords = {Mollified impulse method},\n"
-  " Url = {http://www.sciencedirect.com/science/article/pii/S0021999116306787}\n"
+  " Url = {https://www.sciencedirect.com/science/article/pii/S0021999116306787}\n"
   "}\n\n";
 
 /* ---------------------------------------------------------------------- */

src/USER-MISC/fix_ipi.cpp

@@ -40,7 +40,7 @@ using namespace FixConst;
  * Ceriotti, M., More, J., & Manolopoulos, D. E. (2014).
  * i-PI: A Python interface for ab initio path integral molecular dynamics simulations.
  * Computer Physics Communications, 185, 1019–1026. doi:10.1016/j.cpc.2013.10.027
- * And see [http://github.com/i-pi/i-pi] to download a version of i-PI
+ * And see [https://github.com/i-pi/i-pi] to download a version of i-PI
  ******************************************************************************************/
 
 // socket interface

src/USER-MISC/fix_rhok.cpp

@@ -36,7 +36,7 @@ static const char cite_fix_rhok[] =
   "title = {Direct calculation of the solid-liquid Gibbs free energy difference in a single equilibrium simulation},\n"
   "volume = {139},\n"
   "number = {10},\n"
-  "url = {http://aip.scitation.org/doi/10.1063/1.4818747},\n"
+  "url = {https://aip.scitation.org/doi/10.1063/1.4818747},\n"
   "doi = {10.1063/1.4818747},\n"
   "urldate = {2017-10-03},\n"
   "journal = {J. Chem. Phys.},\n"

src/USER-OMP/reaxc_bond_orders_omp.cpp

@@ -23,7 +23,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_bond_orders_omp.h"

src/USER-OMP/reaxc_bonds_omp.cpp

@@ -23,7 +23,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_bonds_omp.h"

src/USER-OMP/reaxc_forces_omp.cpp

@@ -23,7 +23,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_forces_omp.h"

src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp

@@ -23,7 +23,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_hydrogen_bonds_omp.h"

src/USER-OMP/reaxc_init_md_omp.cpp

@@ -23,7 +23,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_init_md_omp.h"

src/USER-OMP/reaxc_multi_body_omp.cpp

@@ -23,7 +23,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_multi_body_omp.h"

src/USER-OMP/reaxc_nonbonded_omp.cpp

@@ -23,7 +23,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "pair_reaxc_omp.h"

src/USER-OMP/reaxc_torsion_angles_omp.cpp

@@ -23,7 +23,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_torsion_angles_omp.h"

src/USER-OMP/reaxc_valence_angles_omp.cpp

@@ -23,7 +23,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_valence_angles_omp.h"

src/USER-REAXC/reaxc_allocate.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_allocate.h"

src/USER-REAXC/reaxc_bond_orders.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_bond_orders.h"

src/USER-REAXC/reaxc_bonds.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_bonds.h"

src/USER-REAXC/reaxc_control.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_control.h"

src/USER-REAXC/reaxc_ffield.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_ffield.h"

src/USER-REAXC/reaxc_forces.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_forces.h"

src/USER-REAXC/reaxc_hydrogen_bonds.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_hydrogen_bonds.h"

src/USER-REAXC/reaxc_init_md.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_init_md.h"

src/USER-REAXC/reaxc_io_tools.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_io_tools.h"

src/USER-REAXC/reaxc_list.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_list.h"

src/USER-REAXC/reaxc_lookup.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_lookup.h"

src/USER-REAXC/reaxc_multi_body.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_multi_body.h"

src/USER-REAXC/reaxc_nonbonded.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_nonbonded.h"

src/USER-REAXC/reaxc_reset_tools.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_reset_tools.h"

src/USER-REAXC/reaxc_system_props.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_system_props.h"

src/USER-REAXC/reaxc_tool_box.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_tool_box.h"

src/USER-REAXC/reaxc_torsion_angles.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_torsion_angles.h"

src/USER-REAXC/reaxc_traj.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_traj.h"

src/USER-REAXC/reaxc_valence_angles.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_valence_angles.h"

src/USER-REAXC/reaxc_vector.cpp

@@ -21,7 +21,7 @@
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
   See the GNU General Public License for more details:
-  <http://www.gnu.org/licenses/>.
+  <https://www.gnu.org/licenses/>.
   ----------------------------------------------------------------------*/
 
 #include "reaxc_vector.h"

src/USER-SMTBQ/pair_smtbq.cpp

@@ -35,7 +35,7 @@
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
    See the GNU General Public License for more details:
-   <http://www.gnu.org/licenses/>.
+   <https://www.gnu.org/licenses/>.
    ------------------------------------------------------------------------- */
 
 #include "pair_smtbq.h"

src/hashlittle.cpp

@@ -51,7 +51,7 @@ satisfy this are
    14  9  3  7 17  3
 Well, "9 15 3 18 27 15" didn't quite get 32 bits diffing
 for "differ" defined as + with a one-bit base and a two-bit delta.  I
-used http://burtleburtle.net/bob/hash/avalanche.html to choose
+used https://burtleburtle.net/bob/hash/avalanche.html to choose
 the operations, constants, and arrangements of the variables.
 
 This does not achieve avalanche.  There are input bits of (a,b,c)