|
|
|
@ -8,9 +8,9 @@ module. Because of the dynamic loading, it is required that LAMMPS is
|
|
|
|
compiled in :ref:`"shared" mode <exe>`. It is also recommended to
|
|
|
|
compiled in :ref:`"shared" mode <exe>`. It is also recommended to
|
|
|
|
compile LAMMPS with :ref:`C++ exceptions <exceptions>` enabled.
|
|
|
|
compile LAMMPS with :ref:`C++ exceptions <exceptions>` enabled.
|
|
|
|
|
|
|
|
|
|
|
|
Two files are necessary for Python to be able to invoke LAMMPS code:
|
|
|
|
Two components are necessary for Python to be able to invoke LAMMPS code:
|
|
|
|
|
|
|
|
|
|
|
|
* The LAMMPS Python Module (``lammps.py``) from the ``python`` folder
|
|
|
|
* The LAMMPS Python Package (``lammps``) from the ``python`` folder
|
|
|
|
* The LAMMPS Shared Library (``liblammps.so``, ``liblammps.dylib`` or
|
|
|
|
* The LAMMPS Shared Library (``liblammps.so``, ``liblammps.dylib`` or
|
|
|
|
``liblammps.dll``) from the folder where you compiled LAMMPS.
|
|
|
|
``liblammps.dll``) from the folder where you compiled LAMMPS.
|
|
|
|
|
|
|
|
|
|
|
|
@ -25,10 +25,10 @@ Installing the LAMMPS Python Module and Shared Library
|
|
|
|
======================================================
|
|
|
|
======================================================
|
|
|
|
|
|
|
|
|
|
|
|
Making LAMMPS usable within Python and vice versa requires putting the
|
|
|
|
Making LAMMPS usable within Python and vice versa requires putting the
|
|
|
|
LAMMPS Python module file (``lammps.py``) into a location where the
|
|
|
|
LAMMPS Python package (``lammps``) into a location where the
|
|
|
|
Python interpreter can find it and installing the LAMMPS shared library
|
|
|
|
Python interpreter can find it and installing the LAMMPS shared library
|
|
|
|
into a folder that the dynamic loader searches or into the same folder
|
|
|
|
into a folder that the dynamic loader searches or inside of the installed
|
|
|
|
where the ``lammps.py`` file is. There are multiple ways to achieve
|
|
|
|
``lammps`` package folder. There are multiple ways to achieve
|
|
|
|
this.
|
|
|
|
this.
|
|
|
|
|
|
|
|
|
|
|
|
#. Do a full LAMMPS installation of libraries, executables, selected
|
|
|
|
#. Do a full LAMMPS installation of libraries, executables, selected
|
|
|
|
@ -36,13 +36,13 @@ this.
|
|
|
|
available via CMake), which can also be either system-wide or into
|
|
|
|
available via CMake), which can also be either system-wide or into
|
|
|
|
user specific folders.
|
|
|
|
user specific folders.
|
|
|
|
|
|
|
|
|
|
|
|
#. Install both files into a Python ``site-packages`` folder, either
|
|
|
|
#. Install both components into a Python ``site-packages`` folder, either
|
|
|
|
system-wide or in the corresponding user-specific folder. This way no
|
|
|
|
system-wide or in the corresponding user-specific folder. This way no
|
|
|
|
additional environment variables need to be set, but the shared
|
|
|
|
additional environment variables need to be set, but the shared
|
|
|
|
library is otherwise not accessible.
|
|
|
|
library is otherwise not accessible.
|
|
|
|
|
|
|
|
|
|
|
|
#. Do an installation into a virtual environment. This can either be
|
|
|
|
#. Do an installation into a virtual environment. This can either be an
|
|
|
|
an installation of the python module only or a full installation.
|
|
|
|
installation of the Python package only or a full installation of LAMMPS.
|
|
|
|
|
|
|
|
|
|
|
|
#. Leave the files where they are in the source/development tree and
|
|
|
|
#. Leave the files where they are in the source/development tree and
|
|
|
|
adjust some environment variables.
|
|
|
|
adjust some environment variables.
|
|
|
|
@ -81,19 +81,19 @@ this.
|
|
|
|
|
|
|
|
|
|
|
|
This leads to an installation to the following locations:
|
|
|
|
This leads to an installation to the following locations:
|
|
|
|
|
|
|
|
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| File | Location | Notes |
|
|
|
|
| File | Location | Notes |
|
|
|
|
+========================+===========================================================+=============================================================+
|
|
|
|
+========================+=================================================================+=============================================================+
|
|
|
|
| LAMMPS Python Module | * ``$HOME/.local/lib/pythonX.Y/site-packages/`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| LAMMPS Python package | * ``$HOME/.local/lib/pythonX.Y/site-packages/lammps`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| | * ``$HOME/.local/lib64/pythonX.Y/site-packages/`` (64bit) | |
|
|
|
|
| | * ``$HOME/.local/lib64/pythonX.Y/site-packages/lammps`` (64bit) | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS shared library | * ``$HOME/.local/lib/`` (32bit) | |
|
|
|
|
| LAMMPS shared library | * ``$HOME/.local/lib/`` (32bit) | |
|
|
|
|
| | * ``$HOME/.local/lib64/`` (64bit) | |
|
|
|
|
| | * ``$HOME/.local/lib64/`` (64bit) | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS executable | * ``$HOME/.local/bin/`` | |
|
|
|
|
| LAMMPS executable | * ``$HOME/.local/bin/`` | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS potential files | * ``$HOME/.local/share/lammps/potentials/`` | Set ``LAMMPS_POTENTIALS`` environment variable to this path |
|
|
|
|
| LAMMPS potential files | * ``$HOME/.local/share/lammps/potentials/`` | Set ``LAMMPS_POTENTIALS`` environment variable to this path |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
|
|
|
|
|
|
|
|
For a system-wide installation you need to set
|
|
|
|
For a system-wide installation you need to set
|
|
|
|
``CMAKE_INSTALL_PREFIX`` to a system folder like ``/usr`` (or
|
|
|
|
``CMAKE_INSTALL_PREFIX`` to a system folder like ``/usr`` (or
|
|
|
|
@ -102,19 +102,19 @@ this.
|
|
|
|
privilege, e.g. by using ``sudo cmake --install .``. The
|
|
|
|
privilege, e.g. by using ``sudo cmake --install .``. The
|
|
|
|
installation folders will then by changed to:
|
|
|
|
installation folders will then by changed to:
|
|
|
|
|
|
|
|
|
|
|
|
+------------------------+---------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+---------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| File | Location | Notes |
|
|
|
|
| File | Location | Notes |
|
|
|
|
+========================+===================================================+=============================================================+
|
|
|
|
+========================+=========================================================+=============================================================+
|
|
|
|
| LAMMPS Python Module | * ``/usr/lib/pythonX.Y/site-packages/`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| LAMMPS Python package | * ``/usr/lib/pythonX.Y/site-packages/lammps`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| | * ``/usr/lib64/pythonX.Y/site-packages/`` (64bit) | |
|
|
|
|
| | * ``/usr/lib64/pythonX.Y/site-packages/lammps`` (64bit) | |
|
|
|
|
+------------------------+---------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+---------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS shared library | * ``/usr/lib/`` (32bit) | |
|
|
|
|
| LAMMPS shared library | * ``/usr/lib/`` (32bit) | |
|
|
|
|
| | * ``/usr/lib64/`` (64bit) | |
|
|
|
|
| | * ``/usr/lib64/`` (64bit) | |
|
|
|
|
+------------------------+---------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+---------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS executable | * ``/usr/bin/`` | |
|
|
|
|
| LAMMPS executable | * ``/usr/bin/`` | |
|
|
|
|
+------------------------+---------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+---------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS potential files | * ``/usr/share/lammps/potentials/`` | |
|
|
|
|
| LAMMPS potential files | * ``/usr/share/lammps/potentials/`` | |
|
|
|
|
+------------------------+---------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+---------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
|
|
|
|
|
|
|
|
To be able to use the "user" installation you have to ensure that
|
|
|
|
To be able to use the "user" installation you have to ensure that
|
|
|
|
the folder containing the LAMMPS shared library is either included
|
|
|
|
the folder containing the LAMMPS shared library is either included
|
|
|
|
@ -146,7 +146,7 @@ this.
|
|
|
|
necessary due to files installed in system folders that are loaded
|
|
|
|
necessary due to files installed in system folders that are loaded
|
|
|
|
automatically when a login shell is started.
|
|
|
|
automatically when a login shell is started.
|
|
|
|
|
|
|
|
|
|
|
|
.. tab:: Python module only
|
|
|
|
.. tab:: Python package only
|
|
|
|
|
|
|
|
|
|
|
|
Compile LAMMPS with either :doc:`CMake <Build_cmake>` or the
|
|
|
|
Compile LAMMPS with either :doc:`CMake <Build_cmake>` or the
|
|
|
|
:doc:`traditional make <Build_make>` procedure in :ref:`shared
|
|
|
|
:doc:`traditional make <Build_make>` procedure in :ref:`shared
|
|
|
|
@ -157,37 +157,37 @@ this.
|
|
|
|
|
|
|
|
|
|
|
|
make install-python
|
|
|
|
make install-python
|
|
|
|
|
|
|
|
|
|
|
|
This will try to install (only) the shared library and the python
|
|
|
|
This will try to install (only) the shared library and the Python
|
|
|
|
module into a system folder and if that fails (due to missing
|
|
|
|
package into a system folder and if that fails (due to missing
|
|
|
|
write permissions) will instead do the installation to a user
|
|
|
|
write permissions) will instead do the installation to a user
|
|
|
|
folder under ``$HOME/.local``. For a system-wide installation you
|
|
|
|
folder under ``$HOME/.local``. For a system-wide installation you
|
|
|
|
would have to gain superuser privilege, e.g. though ``sudo``
|
|
|
|
would have to gain superuser privilege, e.g. though ``sudo``
|
|
|
|
|
|
|
|
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| File | Location | Notes |
|
|
|
|
| File | Location | Notes |
|
|
|
|
+========================+===========================================================+=============================================================+
|
|
|
|
+========================+=================================================================+=============================================================+
|
|
|
|
| LAMMPS Python Module | * ``$HOME/.local/lib/pythonX.Y/site-packages/`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| LAMMPS Python package | * ``$HOME/.local/lib/pythonX.Y/site-packages/lammps`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| | * ``$HOME/.local/lib64/pythonX.Y/site-packages/`` (64bit) | |
|
|
|
|
| | * ``$HOME/.local/lib64/pythonX.Y/site-packages/lammps`` (64bit) | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS shared library | * ``$HOME/.local/lib/pythonX.Y/site-packages/`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| LAMMPS shared library | * ``$HOME/.local/lib/pythonX.Y/site-packages/lammps`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| | * ``$HOME/.local/lib64/pythonX.Y/site-packages/`` (64bit) | |
|
|
|
|
| | * ``$HOME/.local/lib64/pythonX.Y/site-packages/lammps`` (64bit) | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
|
|
|
|
|
|
|
|
For a system-wide installation those folders would then become.
|
|
|
|
For a system-wide installation those folders would then become.
|
|
|
|
|
|
|
|
|
|
|
|
+------------------------+---------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+---------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| File | Location | Notes |
|
|
|
|
| File | Location | Notes |
|
|
|
|
+========================+===================================================+=============================================================+
|
|
|
|
+========================+=========================================================+=============================================================+
|
|
|
|
| LAMMPS Python Module | * ``/usr/lib/pythonX.Y/site-packages/`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| LAMMPS Python package | * ``/usr/lib/pythonX.Y/site-packages/lammps`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| | * ``/usr/lib64/pythonX.Y/site-packages/`` (64bit) | |
|
|
|
|
| | * ``/usr/lib64/pythonX.Y/site-packages/lammps`` (64bit) | |
|
|
|
|
+------------------------+---------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+---------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS shared library | * ``/usr/lib/pythonX.Y/site-packages/`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| LAMMPS shared library | * ``/usr/lib/pythonX.Y/site-packages/lammps`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| | * ``/usr/lib64/pythonX.Y/site-packages/`` (64bit) | |
|
|
|
|
| | * ``/usr/lib64/pythonX.Y/site-packages/lammps`` (64bit) | |
|
|
|
|
+------------------------+---------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+---------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
|
|
|
|
|
|
|
|
No environment variables need to be set for those, as those
|
|
|
|
No environment variables need to be set for those, as those
|
|
|
|
folders are searched by default by Python or the LAMMPS Python
|
|
|
|
folders are searched by default by Python or the LAMMPS Python
|
|
|
|
module.
|
|
|
|
package.
|
|
|
|
|
|
|
|
|
|
|
|
For the traditional make process you can override the python
|
|
|
|
For the traditional make process you can override the python
|
|
|
|
version to version x.y when calling ``make`` with
|
|
|
|
version to version x.y when calling ``make`` with
|
|
|
|
@ -199,9 +199,9 @@ this.
|
|
|
|
|
|
|
|
|
|
|
|
.. code-block:: bash
|
|
|
|
.. code-block:: bash
|
|
|
|
|
|
|
|
|
|
|
|
$ python install.py -m <python module> -l <shared library> -v <version.h file> [-d <pydir>]
|
|
|
|
$ python install.py -p <python package> -l <shared library> -v <version.h file> [-d <pydir>]
|
|
|
|
|
|
|
|
|
|
|
|
* The ``-m`` flag points to the ``lammps.py`` python module file to be installed,
|
|
|
|
* The ``-p`` flag points to the ``lammps`` Python package folder to be installed,
|
|
|
|
* the ``-l`` flag points to the LAMMPS shared library file to be installed,
|
|
|
|
* the ``-l`` flag points to the LAMMPS shared library file to be installed,
|
|
|
|
* the ``-v`` flag points to the ``version.h`` file in the LAMMPS source
|
|
|
|
* the ``-v`` flag points to the ``version.h`` file in the LAMMPS source
|
|
|
|
* and the optional ``-d`` flag to a custom (legacy) installation folder
|
|
|
|
* and the optional ``-d`` flag to a custom (legacy) installation folder
|
|
|
|
@ -249,38 +249,38 @@ this.
|
|
|
|
When using CMake to build LAMMPS, you need to set
|
|
|
|
When using CMake to build LAMMPS, you need to set
|
|
|
|
``CMAKE_INSTALL_PREFIX`` to the value of the ``$VIRTUAL_ENV``
|
|
|
|
``CMAKE_INSTALL_PREFIX`` to the value of the ``$VIRTUAL_ENV``
|
|
|
|
environment variable during the configuration step. For the
|
|
|
|
environment variable during the configuration step. For the
|
|
|
|
traditional make procedure, not additional steps are needed.
|
|
|
|
traditional make procedure, no additional steps are needed.
|
|
|
|
After compiling LAMMPS you can do a "Python module only"
|
|
|
|
After compiling LAMMPS you can do a "Python package only"
|
|
|
|
installation with ``make install-python`` and the LAMMPS Python
|
|
|
|
installation with ``make install-python`` and the LAMMPS Python
|
|
|
|
module and the shared library file are installed into the
|
|
|
|
package and the shared library file are installed into the
|
|
|
|
following locations:
|
|
|
|
following locations:
|
|
|
|
|
|
|
|
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| File | Location | Notes |
|
|
|
|
| File | Location | Notes |
|
|
|
|
+========================+===========================================================+=============================================================+
|
|
|
|
+========================+=================================================================+=============================================================+
|
|
|
|
| LAMMPS Python Module | * ``$VIRTUAL_ENV/lib/pythonX.Y/site-packages/`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| LAMMPS Python Module | * ``$VIRTUAL_ENV/lib/pythonX.Y/site-packages/lammps`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| | * ``$VIRTUAL_ENV/lib64/pythonX.Y/site-packages/`` (64bit) | |
|
|
|
|
| | * ``$VIRTUAL_ENV/lib64/pythonX.Y/site-packages/lammps`` (64bit) | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS shared library | * ``$VIRTUAL_ENV/lib/pythonX.Y/site-packages/`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| LAMMPS shared library | * ``$VIRTUAL_ENV/lib/pythonX.Y/site-packages/lammps`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| | * ``$VIRTUAL_ENV/lib64/pythonX.Y/site-packages/`` (64bit) | |
|
|
|
|
| | * ``$VIRTUAL_ENV/lib64/pythonX.Y/site-packages/lammps`` (64bit) | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
|
|
|
|
|
|
|
|
If you do a full installation (CMake only) with "install", this
|
|
|
|
If you do a full installation (CMake only) with "install", this
|
|
|
|
leads to the following installation locations:
|
|
|
|
leads to the following installation locations:
|
|
|
|
|
|
|
|
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| File | Location | Notes |
|
|
|
|
| File | Location | Notes |
|
|
|
|
+========================+===========================================================+=============================================================+
|
|
|
|
+========================+=================================================================+=============================================================+
|
|
|
|
| LAMMPS Python Module | * ``$VIRTUAL_ENV/lib/pythonX.Y/site-packages/`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| LAMMPS Python Module | * ``$VIRTUAL_ENV/lib/pythonX.Y/site-packages/lammps`` (32bit) | ``X.Y`` depends on the installed Python version |
|
|
|
|
| | * ``$VIRTUAL_ENV/lib64/pythonX.Y/site-packages/`` (64bit) | |
|
|
|
|
| | * ``$VIRTUAL_ENV/lib64/pythonX.Y/site-packages/lammps`` (64bit) | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS shared library | * ``$VIRTUAL_ENV/lib/`` (32bit) | |
|
|
|
|
| LAMMPS shared library | * ``$VIRTUAL_ENV/lib/`` (32bit) | |
|
|
|
|
| | * ``$VIRTUAL_ENV/lib64/`` (64bit) | |
|
|
|
|
| | * ``$VIRTUAL_ENV/lib64/`` (64bit) | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS executable | * ``$VIRTUAL_ENV/bin/`` | |
|
|
|
|
| LAMMPS executable | * ``$VIRTUAL_ENV/bin/`` | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
| LAMMPS potential files | * ``$VIRTUAL_ENV/share/lammps/potentials/`` | |
|
|
|
|
| LAMMPS potential files | * ``$VIRTUAL_ENV/share/lammps/potentials/`` | |
|
|
|
|
+------------------------+-----------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
+------------------------+-----------------------------------------------------------------+-------------------------------------------------------------+
|
|
|
|
|
|
|
|
|
|
|
|
In that case you need to modify the ``$HOME/myenv/bin/activate``
|
|
|
|
In that case you need to modify the ``$HOME/myenv/bin/activate``
|
|
|
|
script in a similar fashion you need to update your
|
|
|
|
script in a similar fashion you need to update your
|
|
|
|
@ -302,9 +302,9 @@ this.
|
|
|
|
|
|
|
|
|
|
|
|
You can also :doc:`compile LAMMPS <Build>` as usual in
|
|
|
|
You can also :doc:`compile LAMMPS <Build>` as usual in
|
|
|
|
:ref:`"shared" mode <exe>` leave the shared library and Python
|
|
|
|
:ref:`"shared" mode <exe>` leave the shared library and Python
|
|
|
|
module files inside the source/compilation folders. Instead of
|
|
|
|
package inside the source/compilation folders. Instead of
|
|
|
|
copying the files where they can be found, you need to set the environment
|
|
|
|
copying the files where they can be found, you need to set the environment
|
|
|
|
variables ``PYTHONPATH`` (for the Python module) and
|
|
|
|
variables ``PYTHONPATH`` (for the Python package) and
|
|
|
|
``LD_LIBRARY_PATH`` (or ``DYLD_LIBRARY_PATH`` on MacOS
|
|
|
|
``LD_LIBRARY_PATH`` (or ``DYLD_LIBRARY_PATH`` on MacOS
|
|
|
|
|
|
|
|
|
|
|
|
For Bourne shells (bash, ksh and similar) the commands are:
|
|
|
|
For Bourne shells (bash, ksh and similar) the commands are:
|
|
|
|
@ -325,6 +325,10 @@ this.
|
|
|
|
You can make those changes permanent by editing your ``$HOME/.bashrc``
|
|
|
|
You can make those changes permanent by editing your ``$HOME/.bashrc``
|
|
|
|
or ``$HOME/.login`` files, respectively.
|
|
|
|
or ``$HOME/.login`` files, respectively.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
.. note::
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
The ``PYTHONPATH`` needs to point to the parent folder that contains the ``lammps`` package!
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
To verify if LAMMPS can be successfully started from Python, start the
|
|
|
|
To verify if LAMMPS can be successfully started from Python, start the
|
|
|
|
Python interpreter, load the ``lammps`` Python module and create a
|
|
|
|
Python interpreter, load the ``lammps`` Python module and create a
|
|
|
|
@ -346,7 +350,7 @@ output similar to the following:
|
|
|
|
.. note::
|
|
|
|
.. note::
|
|
|
|
|
|
|
|
|
|
|
|
Unless you opted for "In place use", you will have to rerun the installation
|
|
|
|
Unless you opted for "In place use", you will have to rerun the installation
|
|
|
|
any time you recompile LAMMPS to ensure the latest Python module and shared
|
|
|
|
any time you recompile LAMMPS to ensure the latest Python package and shared
|
|
|
|
library are installed and used.
|
|
|
|
library are installed and used.
|
|
|
|
|
|
|
|
|
|
|
|
.. note::
|
|
|
|
.. note::
|
|
|
|
|