From fcc6cc628e7e04093e2c366a73986f6791f9cd02 Mon Sep 17 00:00:00 2001 From: Axel Kohlmeyer Date: Fri, 20 Aug 2021 13:47:24 -0400 Subject: [PATCH] fix whitespace --- doc/src/fix_bond_swap.rst | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/doc/src/fix_bond_swap.rst b/doc/src/fix_bond_swap.rst index 42ee820c93..dbbaceb61f 100644 --- a/doc/src/fix_bond_swap.rst +++ b/doc/src/fix_bond_swap.rst @@ -99,7 +99,7 @@ eligible for swapping on this step. (3) The distances between 4 pairs of atoms -- (A1,A2), (B1,B2), (A1,B2), (B1,A2) -- must all be less thann the specified *cutoff*\ . -(4) The molecule IDs of A1 and B1 must be the same (see below). +(4) The molecule IDs of A1 and B1 must be the same (see below). If an eligible B1 partner is found, the energy change due to swapping the 2 bonds is computed. This includes changes in pairwise, bond, and @@ -126,7 +126,7 @@ The criterion for matching molecule IDs is how the first use case described above can be simulated while conserving chain lengths. This is done by setting up the molecule IDs for the polymer chains in a specific way, typically in the data file, read by the :doc:`read_data -` command. +` command. Consider a system of 6-mer chains. You have 2 choices. If the molecule IDs for monomers on each chain are set to 1,2,3,4,5,6 then