Commit Graph

18532 Commits

Author SHA1 Message Date
01475cb3a8 Test3 2021-07-02 15:35:59 -06:00
e102864c2d Test2 2021-07-02 15:13:40 -06:00
442585313c Test 2021-07-02 15:11:14 -06:00
cf6570d812 Tweaked comments in grid examples 2021-07-02 15:06:19 -06:00
4295dd2dbc Wrong number 2020-05-25 17:09:32 -06:00
4bfb505123 Added reviewer response doc 2020-05-25 16:35:50 -06:00
4a261f3961 Added python example (!) and turned on switching function 2020-05-23 10:18:16 -06:00
651e9c6397 Initialized arrays to NULL 2020-05-19 11:01:31 -06:00
2fa9e5fefb Completed brute force parallel implementation using MPI_Allreduce() 2019-10-24 19:48:41 -06:00
b44b1f94b7 Merge remote-tracking branch 'upstream/master' into compute-grid 2019-10-24 17:47:03 -06:00
59e3b4c5ba Fixed bug in lammps.py 2019-10-24 16:12:23 -06:00
5956908cfd Added cols for coords 2019-10-23 21:51:36 -06:00
0fc325c98b Got a first pass working for ortho and tri grids 2019-10-23 18:56:21 -06:00
8374280383 Got a first pass working for ortho and tri grids 2019-10-23 18:46:28 -06:00
634c0537a1 Merge pull request #1738 from akohlmey/singularity-update
Update singularity definition files in tools folder
2019-10-23 00:19:52 +02:00
648799ef5e Add PowerTools repo for CentOS8 Singularity definition
Some packages were moved into a PowerTools repo in RHEL8/CentOS8.
2019-10-22 11:22:34 -04:00
054766a380 include info about ready-to-use images uploaded to the singularity library 2019-10-21 14:54:30 +02:00
5200d60dd3 update singularity definition files 2019-10-21 11:29:08 +02:00
762ecf8f0e Completed serial version with PBC, but incorrect 2019-10-19 17:03:19 -06:00
4e6f83ced2 Merge pull request #1726 from akohlmey/singularity
Add Singularity definition files suitable for compiling and debugging LAMMPS
2019-10-16 21:12:22 +02:00
437c0e59f2 Merge pull request #1724 from lammps/lepton-cxx11-handling
Upgrade Lepton library, handle its C++11 requirement
2019-10-16 21:11:00 +02:00
7d5bf968f5 Merge pull request #1728 from evoyiatzis/patch-2
Update compute_gyration_shape.cpp
2019-10-16 21:10:12 +02:00
10031e91bd Update false_positives.txt
Added the name of Mattice in the list
2019-10-16 20:25:53 +02:00
38c819c281 Update compute_gyration_shape.txt
Addition of a textbook where the computed quantities are presented in more detail
2019-10-16 20:12:46 +02:00
2c9ae7ab4b Add -DCOLVARS_LEPTON, track user's choice via DISABLE_CXX11_REQUIREMENT 2019-10-16 08:35:37 -04:00
d02f806735 Merge pull request #1727 from yafshar/master
Set KIM pointer appropriately for Energy
2019-10-16 11:52:44 +02:00
b023e93ac2 Update compute_gyration_shape.cpp
Correct for squaring the eigenvalues of the gyration tensor and simplifying the expressions for the shape parameters
2019-10-16 10:19:06 +02:00
6b0aba9db0 Merge pull request #1725 from charlessievers/fix_gjf_bugs
Fix gjf bugs
2019-10-16 00:36:08 +02:00
681a0e12e3 Set KIM pointer appropriately for Energy 2019-10-15 15:38:19 -05:00
bfcab685ce add reference outputs to example input 2019-10-15 17:28:35 +02:00
3ab4be859c Merge branch 'master' into fix_gjf_bugs 2019-10-15 17:16:33 +02:00
645df22eb9 fix incorrect order of commandline flags in example 2019-10-15 16:36:50 +02:00
e4bbfc992b Singularity definition files for compiling LAMMPS 2019-10-15 16:22:08 +02:00
e7d1d547a1 Merge pull request #1719 from akohlmey/pppm-tip4p-triclinic
Correct pppm/tip4p styles for triclinic boxes
2019-10-15 10:10:39 +02:00
37456733bf prefer local mpi.h file by using '#include "mpi.h"' instead of '#include <mpi.h>' 2019-10-15 09:28:34 +02:00
d53b882a5a Fixed vfull tally bug in KOKKOS 2019-10-14 19:28:20 -07:00
623e8078e3 Fixed vfull tally bug 2019-10-14 19:11:50 -07:00
a517cffd8f Corrected differing syntax in fix_langevin.cpp 2019-10-14 14:41:03 -07:00
9c5c33e869 Updated gjf examples 2019-10-14 14:39:45 -07:00
b6af3c7ad0 Conventional make tweaks to handle Lepton C++11 requirement 2019-10-14 16:05:45 -04:00
b6a6638f49 Add CMake recipe for USER-COLVARS, test C++11 before including Lepton 2019-10-14 16:05:45 -04:00
e04a18fc4f Upgrade Lepton library to version 2019-06-02 2019-10-14 16:05:45 -04:00
28c9255f99 don't include USER-PLUMED in "most" preset 2019-10-14 08:02:59 -04:00
25b114eeb4 avoid compilation failure without installed packages 2019-10-14 07:56:37 -04:00
be01cfffa3 fix typo and port find_M() code to USER-OMP version 2019-10-14 07:53:24 -04:00
94b80f9ac6 correct pppm/tip4p to give correct forces with tip4p with triclinic cells 2019-10-13 17:47:09 -04:00
ea9c1002fe Created placeholders for ComputeGrid and ComputeSNAGrid classes 2019-10-11 17:51:19 -06:00
8f431b0fb8 Merge pull request #1716 from akohlmey/topology-interaction-check
Add topology interaction check to Force::init()
2019-10-11 20:47:14 +02:00
cd0e408d90 Merge pull request #1714 from athomps/clebsch-gordan-check
Added invisible helper function to check values of Clebsch-Gordan coeffs
2019-10-11 20:45:50 +02:00
346b3c53ee Added comm->me check 2019-10-11 11:07:02 -06:00