Commit Graph

24285 Commits

Author SHA1 Message Date
0b4256e67a valid numeric type strings can include * 2021-01-26 22:55:19 -05:00
5d2e3b3ecb direct support for coeff commands
pair_coeff, bond_coeff, angle_coeff, dihedral_coeff, improper_coeff
2021-01-25 20:08:25 -05:00
c7215b54be add labelmap function to variable command 2021-01-23 17:28:11 -05:00
67c2352015 actually assume type labels don't start with number 2021-01-22 21:47:48 -05:00
532242f5e1 begin docs 2021-01-19 23:55:32 -05:00
a0c4fac428 assume type labels begin with letter 2021-01-19 22:56:06 -05:00
739dc46fab type labels: restart support 2021-01-19 21:52:22 -05:00
e138cf2476 add labelmap command 2021-01-15 21:46:40 -05:00
93c33ac4f4 type label support for molecule files
replace types directly for molecule files
2021-01-12 17:52:55 -05:00
d7fb74f0be multi-data-file support for bond, angles, diheddral, impropers 2021-01-11 16:00:37 -05:00
03b697a6e0 labels: introduce framework for multiple data files
subsequent data files merge types with first

starting with support for selected atom types sections, will attach small example to PR
2021-01-08 23:22:19 -05:00
d01b19923d add write_data support, for testing
also refactor label map initialization, memory cleanup
2021-01-07 23:01:15 -05:00
73968fb4d8 prepare for multiple data files
not yet tested
2021-01-07 20:15:25 -05:00
48e1d202fe refactor to use read_data local lmap
also add errors to enforce order of read_data sections
2021-01-07 10:37:24 -05:00
fef2d178e4 use vector<string> for type label arrays 2020-12-17 14:21:42 -05:00
bc32dfb480 refactor into label_map class 2020-12-16 23:07:58 -05:00
40953643ec clean up atom.cpp type labels 2020-12-16 19:13:11 -05:00
767584df36 add find_type function
find integer type from type label
2020-12-16 17:39:07 -05:00
a0911b7563 read_data: add bond, etc. label sections 2020-12-16 17:00:05 -05:00
af1e96c6df generalize read typelabel function
will greatly reduce code # of lines
2020-12-16 12:43:17 -05:00
e4c7ec6933 read_data: add atomtypelabels section
type labels for atoms
2020-12-16 12:26:31 -05:00
305607d019 type labels: make space for labels
put labels in atom.cpp for easy access
2020-12-16 11:27:05 -05:00
1fee2add51 Merge pull request #2518 from ellio167/bump-kim-api-2.2.1
update for kim-api-2.2.1
2020-12-14 17:17:52 -05:00
7f29c56c8f update for kim-api-2.2.1 2020-12-14 00:03:59 -06:00
33888ec345 Merge pull request #2507 from ohenrich/user-cgdna
USER-CGDNA: Introduced ellipsoid pointer in quaternion data access
2020-12-07 18:35:05 -05:00
9feb7414f1 Merge pull request #2510 from athomps/wurtzite-error
Fixed error in Wurtzite script and added more explanation
2020-12-07 18:20:15 -05:00
d350f46a2c Fixed error in Wurtzite script and added more explanation 2020-12-07 09:22:34 -07:00
90f00c01a4 Introduced ellipsoid pointer in quaternion data access 2020-12-03 12:57:55 +00:00
5ea9d97024 Merge pull request #2498 from rbberger/next_lammps_version
Step version string for next LAMMPS release
patch_30Nov2020
2020-11-30 17:58:01 -05:00
cec3e08569 Merge pull request #2499 from rbberger/small_changes
Small changes before next release
2020-11-30 17:57:35 -05:00
302d024909 Make reaxc test case less sensitive 2020-11-30 17:03:10 -05:00
85a69cedcf whitespace 2020-11-30 15:40:32 -05:00
b5d43f1570 Merge branch 'master' into small_changes 2020-11-30 15:39:25 -05:00
cf608d221c Merge pull request #2436 from stanmoore1/eam_tweaks
Kokkos EAM tweaks for V100
2020-11-30 15:38:16 -05:00
c6eed8c3e1 Merge pull request #2497 from stanmoore1/kk_update_3.2.1
Update Kokkos library in LAMMPS to v3.2.1
2020-11-30 15:37:55 -05:00
40dd4e57fb Merge pull request #2467 from jrgissing/bond/react-delete_atoms_bugfix
Bond/react: molecule keyword + bugfixes
2020-11-30 15:35:14 -05:00
ce3c92d52e Avoid duplicate doc target 2020-11-30 14:55:35 -05:00
14f691f0af Add support for NVIDIA OpenCL in Ubuntu gpu containers 2020-11-30 14:46:24 -05:00
a67c4d8d05 Fix Kokkos verison 2020-11-30 12:23:33 -07:00
0f27ba34b0 whitespace 2020-11-30 13:33:09 -05:00
5ffba2d2fa step version string for next LAMMPS release 2020-11-30 13:27:35 -05:00
ec7d3dd84c Add tweak suggested by @weinbe2 to reduce memory reads 2020-11-30 11:21:16 -07:00
369197fd5e Update KOKKOS.cmake 2020-11-30 10:55:40 -07:00
e2e86bbffa Merge pull request #2486 from tomswinburne/master
Very minor bug fix for NEB
2020-11-30 12:55:21 -05:00
e0c87fc0b6 Merge pull request #2419 from akohlmey/reset-invalid-image-flags
Reset invalid image flags on read_data
2020-11-30 12:53:50 -05:00
a6037a957f Update Kokkos library in LAMMPS to v3.2.1 2020-11-30 10:36:13 -07:00
91f21fcd9e Merge pull request #2487 from akohlmey/collected-small-changes
Collected small changes and fixes
2020-11-30 11:36:23 -05:00
7edc34f81c Merge pull request #2495 from auroraustc/fix-fortran2-build
add LAMMPS_LIB_MPI flag to COUPLE-fortran2
2020-11-29 21:25:33 -05:00
7555c82c09 Merge pull request #2492 from lammps/balance-neigh-skin
separate cut planes by neigh skin for balance shift
2020-11-29 17:05:27 -05:00
f58d87b3ec Merge pull request #2478 from rbberger/python_interface_coverage
Add Python unit tests to increase test coverage
2020-11-29 15:19:42 -05:00