Commit Graph

317 Commits

Author SHA1 Message Date
0bf941219f silence compiler warnings 2022-01-27 17:21:50 -05:00
ede7787741 Refactor Atom::data_bodies() 2022-01-04 11:56:56 -05:00
f557bf6e20 implement suggestion by @rbberger 2022-01-04 11:37:32 -05:00
c17a183816 do error checking already in read_data code 2021-12-31 14:34:09 -05:00
6d9764e140 add missing advance of buffer pointer 2021-12-31 00:14:52 -05:00
e6e9aed385 modernize/correct parsing for Bonus and Bodies sections 2021-12-30 22:58:14 -05:00
8d53cd1e5d modernize parsing of Velocities section of data files 2021-12-30 19:14:09 -05:00
7f2b505df3 apply utils overloads 2021-12-30 11:14:48 -05:00
64d6a2fd1f modernize parsing of the Atoms section 2021-12-29 20:24:27 -05:00
c97483c46f modernize parsing of the Masses section in data files 2021-12-29 19:36:18 -05:00
78df5c2258 modernize parsing of Bonds/Angles/Dihedrals/Impropers section of data files 2021-12-29 19:18:42 -05:00
ddf97fa8fc tweak error messages 2021-11-24 15:34:43 -05:00
c8512249b7 Merge branch 'develop' into modify-fix-compute-accessors
# Conflicts:
#	src/PLUGIN/plugin.cpp
2021-10-27 21:14:05 -04:00
85433e8bd1 use true/false instead of 1/0 detected and changed by clang-tidy 2021-10-20 12:41:02 -04:00
5b40e4cb38 new accessor APIs for fixes and computes in Modify plus a few applications 2021-10-16 06:00:28 -04:00
f4851e9103 change check for reset image flags to print messages only once per data file 2021-10-13 21:54:18 -04:00
41a3eccd1c apply utils::logical() to more commands 2021-09-21 07:48:50 -04:00
12406b90a1 more iwyu header updates 2021-09-18 21:24:01 -04:00
bca99f684f update list and order of include files from include-what-you-use analysis 2021-09-18 14:16:48 -04:00
94f83c172a simplify and modernize code a little 2021-09-15 23:15:14 -04:00
7d92d665e8 use explicit scoping when virtual dispatch is not available. 2021-09-15 16:08:17 -04:00
9c301822fd use nullptr 2021-09-15 14:57:10 -04:00
eaf5e08542 detect invalid use and silence compiler warnings 2021-08-24 14:27:20 -04:00
845cebaab1 Add comment 2021-08-19 14:02:57 -06:00
7d0c052425 Fix deallocation with Kokkos 2021-08-19 14:00:37 -06:00
b19a211d70 update code 2021-08-18 18:06:21 -04:00
1e37d1ad7f pretty 2021-08-18 14:34:03 -04:00
e08c4abb4b whitespace fixes 2021-08-18 13:06:00 -04:00
e6af1eecb8 resolved merge conflicts with master 2021-08-17 11:55:33 -06:00
e29bd3d157 update defines from -DLMP_USER-<PKG> to -DLMP_<PKG> for consistency 2021-08-06 14:07:43 -04:00
e6181d14d7 Use latest versions in master branch 2021-07-15 13:53:15 +01:00
0f0059269d Modified data_bonds_post() and calling structure 2021-07-15 13:36:40 +01:00
65e2d8fd5e Added data_bonds_post2() method for testing purposes 2021-07-05 17:29:11 +01:00
4b81802ae8 Created new feature branch for PR as per request 2021-07-05 16:07:40 +01:00
878795e64a bulk rename of remaining USER- packages 2021-06-29 20:12:59 -04:00
8e185a1a12 rename USER-DPD to DPD-REACT 2021-06-29 19:41:23 -04:00
c085e55695 rename USER-SMD package to MACHDYN 2021-06-29 17:19:39 -04:00
13b8c63e7a Merge branch 'master' into user-dielectric 2021-06-05 11:14:44 -04:00
c12f7e226b More cleanup to fix polarize*, access to the per-atom variables from the Atom class, and updates to doc pages 2021-06-01 11:22:14 -05:00
342c84aba4 Updated AtomVecDielectric to support atom properties like full (molecule, bonds, angles, dihedrals, special) 2021-05-28 15:14:56 -05:00
454e11f7a5 Bringing USER-DIELECTRIC up-to-date with latest changes in upstream LAMMPS 2021-05-28 12:41:52 -05:00
09c19a936b update URLs in source code and manual 2021-05-24 14:18:20 -04:00
d1941392d3 disable clang-format for all existing .cpp files (for now) 2021-05-05 23:53:38 -04:00
4738337e47 update/trim list of include files according to the IWYU principle 2021-04-24 13:22:39 -04:00
42895ac6df Merge pull request #2654 from akohlmey/collected-small-changes
Collected small changes
2021-03-16 19:34:54 -04:00
ece2433208 use utils::strdup() for duplicating strings 2021-03-15 17:55:19 -04:00
8c4918457f consistently compare atom->molecular against enumerator constants 2021-03-14 01:25:22 -05:00
3183c4bdb7 avoid calling strtok() when reading per-atom data in data files 2021-03-13 19:23:24 -05:00
826c618aa9 replace a few more cases of atoi()/atof() with utils::*numeric() functions 2021-02-21 15:09:50 -05:00
45f6e9ec2e whitespace 2021-02-17 18:47:41 -05:00