Commit Graph

8119 Commits

Author SHA1 Message Date
5ff0f05933 more details in serial performance summary 2025-05-27 18:07:48 -04:00
6843424dad add version tag, rewrap, minor tweaks to doc page. 2025-05-27 10:38:41 -04:00
d59f7d3381 Merge branch 'develop' into fix-gauss 2025-05-27 10:34:07 -04:00
d6a0d3bacf small update 2025-05-27 07:37:42 -04:00
f5c51af9bc demonstrate how serial and parallel performance can change 2025-05-27 01:15:18 -04:00
6a5ed2af4b add renieigbor option to fix set 2025-05-26 16:22:52 -06:00
2e775034f9 clarify and improve formatting 2025-05-26 03:03:37 -04:00
1f758bcf8e more discussion of items that affect LAMMPS serial and parallel performance 2025-05-26 02:35:30 -04:00
f8665fdf4e add a more explicit warning about using hybrid for many-body potentials
this summarizes advice that has to be given recurringly in the LAMMPS forum
2025-05-26 01:49:01 -04:00
8181224bca discuss in more details factors that affect performance (WIP) 2025-05-25 05:04:59 -04:00
2436bd4411 provide some more talking points for comparison of KOKKOS and GPU package 2025-05-25 05:04:37 -04:00
8d09e440c5 start documentation for JSON format 2025-05-24 02:36:46 -04:00
bc07696ce9 small correction for wildcard expansion 2025-05-20 21:18:07 -04:00
37a344a2ad add example for Python with vector-style variable 2025-05-20 13:33:36 -06:00
2351418c94 made collapse_tree() method work correctly in Variable class for Python function wrappers, also added support for vector-style variables to use Python function wrappers 2025-05-19 21:42:08 -06:00
2744647c75 Merge pull request #4594 from akohlmey/collected-small-changes
Collected small changes
2025-05-19 22:13:37 -04:00
b3402eaae8 Merge pull request #4424 from jtavenner-dev/kmc
add fix neighbor/swap
2025-05-19 20:57:00 -04:00
ac059a15b0 added a NOTE 2025-05-19 14:39:30 -06:00
c3b25c8c27 updated doc pages and code 2025-05-19 14:34:22 -06:00
b9b59bd23c small clarifications and corrections. Sync with current state of affairs 2025-05-19 11:31:42 -04:00
2968a62937 continue refactoring for bio force field and water moldel discussions 2025-05-17 23:30:18 -04:00
e393b9803b add information about the OPC model to the TIP4P howto 2025-05-17 22:41:42 -04:00
63ee449dc1 reformulate description of force components 2025-05-17 21:15:48 -04:00
5fd4d6bb87 remove directionCorrection and update docs for compute pair/local and compute bond/local 2025-05-15 23:15:59 -04:00
ef89edc4c6 Additional edits 2025-05-09 14:53:27 -06:00
bb62f46404 Merge branch 'kmc' of https://github.com/jtavenner-dev/lammps into kmc 2025-05-09 14:27:05 -06:00
17da04f07b Cleaned up language errors 2025-05-09 14:25:08 -06:00
6436cc87b7 Corrected inconsistent voro-ID compute references and examples 2025-05-09 14:23:03 -06:00
60fe08c328 clarify and rewrap 2025-05-07 15:47:35 -04:00
7c2c9ea286 add missing versionadded tag 2025-05-07 02:00:40 -04:00
c0a41bd638 Merge remote-tracking branch 'github/develop' into collected-small-changes 2025-05-06 15:06:43 -04:00
c1e9adbd80 Merge pull request #4574 from talinke/develop
New Fix for GJF Langevin Dynamics
2025-05-06 13:24:06 -04:00
48df0448df spelling 2025-05-06 12:05:12 -04:00
2d22092078 additional info for pair style lj/smooth from Aidan 2025-05-06 12:00:55 -04:00
afcb97aaf2 address spelling issues 2025-05-05 20:22:00 -04:00
fbfe1e6a7c Merge remote-tracking branch 'github/develop' into collected-small-changes 2025-05-05 20:13:42 -04:00
a528b88d8a Merge branch 'update-docs' of github.com:navlalli/lammps-qtpie into collected-small-changes 2025-05-05 20:13:23 -04:00
a1cd18e4cf Merge pull request #4522 from willzunker/mdr-dev
MDR contact model updates: radius update and damping
2025-05-05 20:07:36 -04:00
3b17ea5363 Merge pull request #4556 from Colvars/colvars-update
Update Colvars library to version 2025-04-18
2025-05-05 20:03:27 -04:00
228cf1e871 Correct leftover references to vector inputs in docs 2025-05-03 19:07:01 +02:00
f3adda8d3e clean-up code and doc page 2025-05-02 16:21:41 -06:00
af840176e7 doc page tweak 2025-05-02 16:14:55 -06:00
79f6867d7e new doc page for fix set command with example 2025-05-02 16:13:01 -06:00
10077b057c Update fix_ave_moments.rst
Emphasized the difference in behavior between this fix and other fix ave/* commands with regards to Nevery, Nrepeat and Nfreq.
2025-05-02 21:42:33 +02:00
37221c080b Add self-citation 2025-05-02 13:52:17 +01:00
55a13efad0 small update 2025-05-02 00:30:22 -04:00
a388bd38ee add LAMMPS-GUI screenshot image 2025-05-02 00:21:41 -04:00
565e7b2c2b Add documentation for ave/moments 2025-05-02 01:20:36 +02:00
e474bfeece Merge remote-tracking branch 'github/develop' into atom-style-var-with-python 2025-05-01 16:03:27 -04:00
9b36c58eb2 fix spelling and docbuild issues 2025-05-01 16:03:11 -04:00