Commit Graph

31649 Commits

Author SHA1 Message Date
0e2b51010c simplify 2022-08-11 09:51:37 -04:00
0b38cbea2d add get_dump_by_index() function 2022-08-11 09:46:22 -04:00
d41d5960e4 simplify and modernize 2022-08-11 04:07:49 -04:00
f9352e6ad7 update unit test for groups 2022-08-11 03:56:29 -04:00
2eb6ff1111 allow const char * argument 2022-08-11 03:45:56 -04:00
91b98484ad modernize and simplify 2022-08-11 03:45:36 -04:00
aab62d5ed9 add get_dump_list() function 2022-08-11 03:14:59 -04:00
c574ed51b5 modernize and simplify 2022-08-11 03:04:58 -04:00
9bd45e70da simplify and modernize 2022-08-11 03:00:37 -04:00
2b16a8d1c6 document how to update code that uses Output::find_dump() 2022-08-11 02:19:18 -04:00
e8e6beed50 find dump is no longer used 2022-08-11 01:52:42 -04:00
76123d3347 change hyper command to use get_dump_by_id() instead of find_dump() 2022-08-11 01:52:27 -04:00
208caacb89 Merge pull request #3390 from hammondkd/fortran2_updates
Fixed a bug (xz and yz reversed) in LAMMPS.F90 and changed mpif90 to …
2022-08-10 20:49:17 -04:00
b565d10a3d Merge pull request #3388 from chemshift/mliap-bug-3204
Mliap bug 3204
2022-08-10 19:33:59 -04:00
c9c3f68bdf Merge pull request #3387 from akohlmey/collected-small-changes
Collected small changes and bug fixes
2022-08-10 18:34:52 -04:00
f1cca7d37d Update __init__.py 2022-08-10 12:22:29 -06:00
15261aaa71 Fixed a bug (xz and yz reversed) in LAMMPS.F90 and changed mpif90 to mpifort in README for files in examples/COUPLE/fortran2 2022-08-10 11:11:27 -05:00
e592f0f139 clarify the function of -nonbuf a bit more 2022-08-10 07:03:57 -04:00
631f33feb5 remove redundant calls 2022-08-10 06:57:59 -04:00
3a4a0078cd whitespace 2022-08-09 16:51:48 -04:00
6eb51a68d9 move dump command after reset_timestep to avoid crash 2022-08-09 16:51:48 -04:00
c8b6b052fc port sorting by time to python 3 while retaining compatibility with 2.7 2022-08-09 16:51:48 -04:00
111caac960 remove references to Numeric module. we only support numpy. 2022-08-09 16:11:09 -04:00
5c589dbe20 add -nonbuf / -nb command line flag to disable buffering for screen and logfile 2022-08-09 15:52:47 -04:00
ba7507c9e5 small tweaks 2022-08-09 14:47:58 -04:00
247a2b12b3 use utils::inumeric() instead of atoi() (not for parsing environment variables yet) 2022-08-09 14:30:44 -04:00
3178f05bbf Merge branch 'develop' into collected-small-changes 2022-08-09 14:25:53 -04:00
ee89ef6084 Merge pull request #3389 from cjknight/polaris_updates
one more env var for local mpi rank
2022-08-09 14:19:10 -04:00
d5170a1703 one more env var for local rank 2022-08-09 17:35:22 +00:00
7e0cad7d9e import fix from upstream 2022-08-08 15:40:19 -04:00
f7b0cb3bd4 AMOEBA induce bugfixes 2022-08-08 15:31:45 -04:00
92dc854ed4 workaround for IBM's XLClang compiler 2022-08-08 15:27:52 -04:00
fb2dd26d45 Merge pull request #3383 from hammondkd/doc-fixes
Documentation fixes
2022-08-08 14:51:38 -04:00
94403eaf76 Merge branch 'mliap-bug-3204' of https://github.com/chemshift/lammps into mliap-bug-3204 2022-08-08 12:09:07 -06:00
fd2ab2a8b9 Update __init__.py 2022-08-08 12:08:46 -06:00
5962dde035 Merge branch 'lammps:develop' into mliap-bug-3204 2022-08-08 11:47:16 -06:00
953d2c738b Update __init__.py 2022-08-08 11:45:43 -06:00
da8135c875 Merge pull request #3384 from akohlmey/collected-small-changes
Collected small changes and fixes
2022-08-08 11:11:49 -04:00
2227de3231 Update __init__.py 2022-08-07 23:00:35 -06:00
2d3504ff0f Locate correct dynamics library directories
in Anaconda Environments
2022-08-07 22:54:59 -06:00
3ca8df388d fix a couple of typos 2022-08-06 23:01:35 -04:00
42594bbbb7 Convert path to test inputs folder to native syntax on windows to make tests with file copying portable. 2022-08-06 22:46:52 -04:00
0f68aa80fe fix typo 2022-08-06 21:44:56 -04:00
e6b47b0b4d make test input platform independent with is_os() variable function 2022-08-06 21:44:49 -04:00
4ac74a4153 add is_os() special function to the variable command 2022-08-06 21:44:03 -04:00
5b0a9cea99 use ISO_C_BINDING compatible return type 2022-08-06 20:43:04 -04:00
b465d3c86f silence compiler warnings about unused variables 2022-08-06 19:59:37 -04:00
f92e57ba9e Must always enable exception handler with MSVC and also with Intel classic on windows. 2022-08-06 19:58:44 -04:00
a9aa462a60 use alternate way to incorporate the module via "include" in the source code 2022-08-06 18:47:31 -04:00
801d59a9ac correct MPI detection for Fortran 2022-08-06 18:46:56 -04:00