e7d8165a46
fixed spelling mistakes reported by sphix
2019-09-09 02:16:30 -07:00
91a1971977
added a line to tools/README and fixed the alphabetical ordering in docs
2019-09-09 02:04:59 -07:00
8c113f5fdb
added LD potential and wrote html-style doc
2019-09-09 01:51:04 -07:00
450f437d9f
bond/react:another edge atom clarification
2019-09-08 22:59:59 -06:00
e40a710f04
comm_modify docs tweak
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comm_modify cutoff usage clarification, when using restart files
2019-09-06 01:38:17 -06:00
49b5825e8d
bond/react docs tweak: address a common mistake
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no atom of a small molecule should be specified as an edge atom
2019-09-05 23:50:57 -06:00
bb0225c02e
clear svector for every invocation. document changes
2019-09-05 14:29:10 -04:00
96c21bec98
added new valid words to doc/utils/sphinx-config/false_positives.txt
2019-09-04 23:16:19 -07:00
21699b89e0
python tool to reorder replica traj
2019-09-04 15:26:10 -07:00
50af20d194
bond/react: remember reaction counts
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allow restart files to restore cumutative reaction counts
2019-09-01 23:31:31 -06:00
9961229226
Update docs
2019-08-28 10:01:00 -06:00
f1563ed988
Commit JT 082719
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- correcting min_modify.txt
2019-08-27 17:44:04 -06:00
3ec9317d03
Modified documentation
2019-08-26 14:28:09 -06:00
07fceec1ee
Tweaked doc page
2019-08-25 23:26:42 -06:00
fb702fa9d6
Added FCC, BCC, and ICOS examples
2019-08-25 23:02:41 -06:00
0b34db7881
Merge pull request #1642 from lammps/chunk-doc
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add another example to Howto chunk doc page
2019-08-25 20:16:35 -04:00
fc7565177b
Merge branch 'master' into Ncreate_atoms
2019-08-23 20:52:04 -06:00
f44470fe63
Added fcc and bcc examples for the Steinhardt-Nelson parameters
2019-08-23 16:28:13 -06:00
ddab4eeb1a
Remove SHA1 utility used in doc Makefile
2019-08-22 14:11:32 -06:00
574e4067dc
Add documentation files in RST format
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This is the first step for moving the documentation format from *.txt to the
*.rst format.
In the last years we've been automatically converting txt files from Steve's
markup into RST to generate the documentation pages via Sphinx. The decision
has now been made to fully migrate to RST and avoid the conversion in the
future.
This will enable us to fully use RST and Sphinx to improve the documentation.
For the intermediate period, while there are still pending PRs with
documentation changes, we will keep both source files and update the RST files
accordingly.
2019-08-22 14:11:32 -06:00
cb999ad65f
fix typo
2019-08-22 13:46:24 -04:00
c74f5ae416
add another example to Howto chunk doc page
2019-08-22 11:37:21 -06:00
8ec4e3fc91
Commit JT 082219
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- modified min spin names (removed oso from spin/cg and spin/lbfgs)
- modified associated option name (from spin_oso_cg to spin/cg, same for
lbfgs)
- modified .gitignore, doc pages, and examples accordingly
2019-08-22 10:48:58 -06:00
ad83f0e2e3
update docs to add morse in a similar style to fix wall/region
2019-08-21 17:12:04 -04:00
aac557a98f
integrate fix wall/morse docs properly into manual
2019-08-21 16:00:14 -04:00
6a584672e8
implement fix wall/morse based on fix wall/region and fix wall/harmonic
2019-08-21 16:00:14 -04:00
82b3fad152
Merge pull request #1628 from erozic/feature-wall-region-morse
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Added "morse" style to the "wall/region" fix
2019-08-21 11:47:43 -04:00
12c73e7a61
Merge branch 'upstream-master' into OSO
2019-08-21 14:03:42 +00:00
cfa9179b28
Merge pull request #1503 from etomica/master
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Implement HMA compute in LAMMPS
2019-08-21 00:12:16 -04:00
b5a79f9616
update fix wall/region docs as requested by @sjplimp (i hope)
2019-08-20 16:50:49 -04:00
3d9e737a19
change order of morse style wall potential parameters to be consistent with pair morse and bond morse
2019-08-20 11:27:29 -04:00
a0f49f27d9
Final tweaks to HMA documentation
2019-08-19 18:15:19 -04:00
9a849a4d4f
Merge branch 'master' into master
2019-08-19 15:55:39 -06:00
a5acf1655b
resolve small formatting glitch
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Text blocks must all be flush on the left side or else sphinx gets confused since indenting is part of the syntax.
2019-08-16 17:30:37 -04:00
cc14103f28
Bug fixes in granular pair style:
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- correct formula for tangent forces in style with no history in compute() and in single() functions
- remove tangent history update in the single() function
- implement correct output for tangent, normal and rolling forces in single() function
- correct typos in documentation
2019-08-16 15:28:36 -05:00
47533bc526
Update fix_wall_region.txt
2019-08-13 00:31:03 +02:00
ff09c19149
documentation for fix_wall_region morse
2019-08-13 00:10:50 +02:00
18725ce060
reformat documentation to match typical LAMMPS conventions, change links
2019-08-09 15:42:32 -04:00
5f442d7b64
add a couple of false positives
2019-08-09 15:31:22 -04:00
11f1ba220b
fix typo
2019-08-09 15:30:55 -04:00
838238b1ca
documentation
2019-08-08 00:38:41 +02:00
d08d6b5fb0
Merge pull request #1623 from akohlmey/next-version
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Step version string for stable release
2019-08-06 11:17:40 -04:00
59046e7444
step version number for stable release
2019-08-06 08:52:54 -04:00
2d64323354
fix formatting and augment explanation for bbox option
2019-08-05 17:21:11 -06:00
25b504d4fd
Merge pull request #1615 from akohlmey/next_version
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Step version string for stable release
2019-08-05 19:13:17 -04:00
34cc7ed5b1
Merge pull request #1619 from ellio167/kim-doc-update
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Update kim query url in docs
2019-08-05 17:39:40 -04:00
2092b2c010
Step version string for stable release
2019-08-05 16:58:26 -04:00
e39b85b62f
Update kim query url in docs
2019-08-05 15:23:57 -05:00
f2757eaf41
Mention LAMMPS_LIB_SUFFIX in docs
2019-08-05 14:00:56 -04:00
096c225594
Merge pull request #1613 from rbberger/cmake_docs_update
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Update CMake documentation
2019-08-04 18:32:11 -04:00
