Commit Graph

6774 Commits

Author SHA1 Message Date
d0cc1dfbb8 changes to SNAP virial from Aidan 2017-07-13 11:19:35 -06:00
5055b2ab7d Merge remote-tracking branch 'upstream/master' 2017-07-11 20:04:26 +02:00
9c9f6933cd final cleanup? min_modify options, quick documentation 2017-07-11 17:46:24 +02:00
c8939d8df6 clarify explanation of body style molecule in rigid fixes 2017-07-11 09:43:54 -04:00
c9a0d38a3e mention restriction for use with fix shake or fix rigid in fix gcmc docs 2017-07-10 17:34:00 -04:00
fe888e4622 add support for recomputing normalization factors and finite size correction during 2017-07-07 15:39:25 -04:00
4339379948 patch 6Jul17 2017-07-06 13:58:26 -06:00
23925b3a57 update fix wall/ees and wall/region/ees file to conform more to common formatting
also fix some typos and formatting issues
2017-07-06 14:47:44 -04:00
423e3b6389 integrate fix wall/ees and wall/region/ees into doc system 2017-07-06 14:45:51 -04:00
8be6d5bfd8 Merged two doc files 2017-07-06 20:21:55 +09:00
a62eb43791 Delete "fix_wall_region_ees.txt" 2017-07-06 20:20:12 +09:00
33be51af54 Deleted "fix wall/region/ees" doc file 2017-07-06 20:19:40 +09:00
ea4f16bd79 additional fix external hooks for calling programs 2017-07-05 10:01:19 -06:00
92831f185b Merge branch 'master' of https://github.com/aershadinia/lammps 2017-07-05 23:23:09 +09:00
7e42af18bc Feature: AIREBO parametrize cutoff switching
In #514 it has been raised that the switching function that
ensures a smooth transition to the cutoff is only correct if
cutlj = 3.0. This patch gives users an opportunity to configure
the switching function together with the cutoff by specifying
the start of the transition region. Behaviour in the default case
remaing unchanged.
This allows users to specify larger cutoffs than 3 (which used to
have no effect) and get correct cutoff behaviour for values less
then 3.
2017-07-05 15:11:58 +02:00
f670dba3d0 3rd variant of Fortran wrapper for DFTB+ calling LAMMPS 2017-07-03 14:24:16 -06:00
6fc0a94e87 Merge pull request #524 from martok/package-meamc
Package USER-MEAMC
2017-07-03 12:30:01 -06:00
e634c5a2de memory allocation bugfix for USER-INTEL pppm from M Brown 2017-07-03 08:53:53 -06:00
883b7aaa0e Merge pull request #557 from lammps/create-bonds
add single options to create_bonds command
2017-06-30 14:18:15 -06:00
b445f8eadf spell-check new additions to create_bonds doc page 2017-06-30 14:59:08 -04:00
b79044d4f6 Merge pull request #554 from jewettaij/master
Have extra/XXX/per/atom set by keyword to the read_data command
2017-06-30 11:47:46 -06:00
711afe5062 add single options to create_bonds command 2017-06-30 11:30:43 -06:00
b2b621a2e1 Merge pull request #547 from akohlmey/collected-bugfixes
Collected small bugfixes and updates
2017-06-30 11:08:02 -06:00
f6faad335c update documentation for nb3/harmonic pair style according to e-mail to lammps-users 2017-06-30 11:37:18 -04:00
d5921e9fb9 consolidate and update error message and read_data documentation for the updated read_data command 2017-06-29 16:30:49 -04:00
38075455b6 new keywords for read_data: extra/X/per/atoms + changes to docs 2017-06-28 17:55:30 -07:00
1370385c8c patch 23Jun17 2017-06-23 17:10:59 -06:00
4fcbd58d5a doc page clarifications for CHARMM energy and dipole pre-factors 2017-06-23 15:54:14 -06:00
feb500b526 reword the kspace_modify fftbench keyword docs to reflect the current state (i.e. off by default) of code 2017-06-22 19:17:41 -04:00
7a4a569859 Merge pull request #540 from lammps/neighrespa
fix issue with rRESPA inner/middle neighbor lists
2017-06-22 07:54:12 -06:00
de3157f720 document new restrictions to CHARMM compatible dihedral styles 2017-06-21 19:31:40 -04:00
1fc2eb1e3e fix issue with rRESPA inner/middle neighbor lists 2017-06-21 15:12:51 -06:00
1a77135ed6 whitespace cleanup in docs 2017-06-21 09:38:10 -04:00
f45c7e1fb0 update fix ti/spring docs to reflect it is part of USER-MISC 2017-06-21 09:36:30 -04:00
87c028ed02 patch 20Jun17 2017-06-20 12:06:02 -06:00
72a1364d85 Merge branch 'master' into package-meamc 2017-06-20 13:21:46 -04:00
50c9167913 small formatting correction in fix neb docs 2017-06-20 10:36:30 -04:00
d2610d9e7c minor changes to NEB doc pages and examples 2017-06-20 08:19:23 -06:00
9d3e34e492 add missing reference for lj/smooth/linear 2017-06-19 11:23:30 -04:00
8988b692a3 modified the documentation, first and last freeend can have different spring constants 2017-06-19 16:30:42 +02:00
cd88b31450 same PR, also has cosmetic changes to new fix neb options 2017-06-16 17:02:05 -06:00
9b9f6d6fe2 USER-INTEL upgrade from M Brown 2017-06-16 16:56:28 -06:00
d3c90f3c14 Merge pull request #510 from akohlmey/collected-small-changes
Collected small changes
2017-06-15 11:12:14 -06:00
1a29048940 Merge pull request #531 from ohenrich/user-cgdna
Affiliation Update for USER-CGDNA
2017-06-15 08:54:52 -06:00
7227bc415d Merge pull request #526 from andeplane/vashishta_gpu
Implemented pair style vashishta in GPU package
2017-06-15 08:52:13 -06:00
30177c4eae Merge pull request #521 from pastewka/17_dump_nc
Updated NetCDF dump style (dump netcdf)
2017-06-15 08:47:29 -06:00
576b7f1d97 Merge pull request #519 from Pakketeretet2/USER-MANIFOLD-gaussian-bump
Some extensions/cleanup in USER-MANIFOLD
2017-06-15 08:46:55 -06:00
86369fec6b Merge pull request #517 from akohlmey/select-rigid-reinit-option
Add `reinit` keyword to rigid body fixes
2017-06-15 08:46:29 -06:00
9a7207e34c Merge pull request #511 from akohlmey/add-compute-cnp
Integrate compute cnp/atom contributed by Paulo Branicio (USC)
2017-06-15 08:38:05 -06:00
3c7417fb59 Merge pull request #497 from lammps/add-user-reaxc-omp
Add USER-OMP compatible OpenMP support to USER-REAXC
2017-06-15 08:24:03 -06:00