Commit Graph

22697 Commits

Author SHA1 Message Date
ac48f2dd67 add a hard dependency of MLIAP on SNAP 2020-06-22 13:30:43 -04:00
b0dd93f06f Whitespace tweak 2020-06-22 10:50:31 -06:00
5a1882e00d Merge branch 'mliap' of github.com:athomps/lammps into mliap 2020-06-22 12:01:34 -04:00
18597a6389 Removed computes 2020-06-22 10:00:19 -06:00
8eb6c2e037 Merge branch 'mliap' of github.com:athomps/lammps into mliap 2020-06-22 11:40:22 -04:00
743a14aea0 Fixed incomplete documentation entries for mliap 2020-06-22 09:35:16 -06:00
233b56105a Merge branch 'master' into mliap 2020-06-22 11:24:49 -04:00
75114afc0e integrate MLIAP package into CMake procedure 2020-06-22 11:24:44 -04:00
bbd9af0d6f Fixed a few minor problems 2020-06-22 09:11:38 -06:00
10ace11c0b Fixed spelling and false positives 2020-06-21 21:10:03 -06:00
9238c2a624 Finished first version of MLIAP package 2020-06-21 19:57:08 -06:00
549c6343f3 Merged MLIAP package into latest LAMMPS created SNAP, quadratic SNAP, and ChemSNAP examples 2020-06-21 18:05:34 -06:00
564974b6a4 Merge remote-tracking branch 'origin/ml_chem_snap' 2020-06-21 16:07:03 -06:00
ab42123005 add test for atom style sphere 2020-06-21 16:56:04 -04:00
a98d03ee0e add missing linefeed 2020-06-21 16:55:55 -04:00
7bb4a2a81a Fix a typo in the GPU Docs 2020-06-21 19:37:59 +03:00
0ba701acd7 Remove trailing space 2020-06-20 17:25:16 +03:00
723b9e6760 Try to keep compatibility with deprecated ROCm hcc compiler 2020-06-20 15:17:54 +03:00
55d6f1a34f Fixed variable name to be more consistent with rest of code. 2020-06-19 19:33:17 -04:00
f5a31fefdc Merge pull request #2171 from athomps/orientorder-components-parity
Switched the sign of spherical harmonics for m odd
2020-06-19 18:46:15 -04:00
9f6b2e97b1 Merge pull request #2169 from lammps/hyper-debug
Tweaks to local hyper dynamics
2020-06-19 17:17:56 -04:00
5148834d23 Merge pull request #2162 from akohlmey/collected-small-changes
Collected small changes
2020-06-19 17:07:07 -04:00
641f924161 Port changes to Kokkos package 2020-06-19 14:44:13 -06:00
b218fc44da Merge branch 'master' of https://github.com/lammps/lammps into orientorder-components-parity 2020-06-19 14:32:00 -06:00
bb40613db3 convert input degrees to internal radians for create_atoms rotate 2020-06-19 15:38:36 -04:00
a862a8c764 use {fmt} 2020-06-19 15:37:53 -04:00
4a2ab6d2f3 mods to fix adapt and doc pages for restarting 2020-06-19 12:48:06 -06:00
c7874fca86 Switched the sign of spherical harmonics for m odd 2020-06-19 12:18:11 -06:00
befd4c8bfd Optimizations to Compute[Yi/Zi/Bi], switching over to an AoSoA data layout on the GPU. CPU vs GPU code paths are now maximally divergent, will include some discussion of that in PR. Small performance tweaks in Compute[UiTot/FusedDeidrj]. 2020-06-19 14:12:29 -04:00
a40f4873fb comment out debug options and make some tallies bigints 2020-06-19 10:35:42 -06:00
3cdf0e286e add comments to explain why 1 item is added to rendezvous buffers. 2020-06-19 12:32:11 -04:00
08cb7664a3 renumber customization comments 2020-06-19 12:31:47 -04:00
4a447f1809 move deleting all array data associated with an atom style to AtomVec base class destructor 2020-06-19 12:31:31 -04:00
4d630904b4 relax a few more test criteria to be compatible with intel compilers 2020-06-19 11:43:59 -04:00
8f4e18ba3a change logic of selecting and allowing sanitizer options to be compatible with unsupported compilers 2020-06-19 11:30:38 -04:00
0249cf7510 better and more general version of the previous commit 2020-06-19 01:10:45 -04:00
a4de04d823 make certain that allocated buffers in Comm::rendezvous_all2all() are not NULL 2020-06-19 00:44:09 -04:00
343241cb63 relax some test epsilons 2020-06-19 00:43:11 -04:00
e934f7bac3 try to work around linker issues with older CMake versions and using coverage or sanitizers 2020-06-19 00:20:20 -04:00
7e2f29bb65 Merge pull request #2168 from charlessievers/chem_snap
Chem snap bugifx
2020-06-18 23:59:25 -04:00
f78671c1a4 reorganize memory (de-)allocation and fix substantial memory leak in MSM 2020-06-18 23:43:16 -04:00
d8e0f553b6 Merge remote-tracking branch 'origin/chem_snap' into chem_snap 2020-06-18 18:21:10 -07:00
9b73b4a6ca Unnecessary loop over zero_yi for non chem snap multielement systems 2020-06-18 18:20:30 -07:00
02ffa46fa7 simplify memory management and plug leaks in pair style bop 2020-06-18 17:12:51 -04:00
8eed1b27ff GPU Makefile cleanup 2020-06-19 00:07:10 +03:00
2ea5d9956a find_package is unnecessary for rocprim 2020-06-19 00:01:03 +03:00
328709513b plug memory leaks in pair style comb and comb3 2020-06-18 16:34:25 -04:00
fcdd2c5026 prevent memory leaks in pair style tersoff/table 2020-06-18 16:13:02 -04:00
b83fab92bf document coding style and sanitizing options 2020-06-18 13:35:07 -04:00
dfe860c4bb update coding style 2020-06-18 13:34:34 -04:00