Commit Graph

38026 Commits

Author SHA1 Message Date
1135d6be64 Noting artificial/visc exception in doc 2024-04-10 10:44:41 -06:00
c63c1856ec Fix compilation error, edit artificial visc toggle 2024-04-04 11:21:42 -06:00
ceec24d50b Adding hybrid support to BPM, more doc pages 2024-04-04 09:42:10 -06:00
08db64c27f More updates for oxidation, more doc pages 2024-03-31 21:40:34 -06:00
7ea0dc3996 Adding more oxidation features + doc pages 2024-03-29 19:00:14 -06:00
010a4c076b Prototyping oxidation 2024-03-28 11:31:21 -06:00
b3de75da97 Cleaning up math, fixing tension bug, patching bond creation 2024-02-23 13:26:28 -07:00
70ea1dd352 Refreshing no shift flag for solid particles 2024-01-23 14:58:31 -07:00
dd7e95cd12 Merge branch 'rheo' of github.com:jtclemm/lammps into rheo 2024-01-23 14:04:28 -07:00
574ccc64eb Fixing bugs for solid particles 2024-01-23 14:04:10 -07:00
80861fe1ff New syntax in doc files 2024-01-19 21:24:27 -07:00
affb879037 Merge branch 'develop' into rheo 2024-01-18 14:52:15 -07:00
af60285a3f Merge pull request #4048 from akohlmey/lepton_updates
Update LEPTON styles for more flexibility
2024-01-18 16:34:38 -05:00
0ad1d29c4d Merge pull request #4047 from stanmoore1/kk_fix_exchange_bug
Fix bug in some Kokkos fixes' unpack exchange on device
2024-01-18 14:58:09 -05:00
fe1b568241 Merge pull request #4046 from akohlmey/molecule-dipole
Add support for Dipoles section to molecule files
2024-01-18 14:57:01 -05:00
14abc184f8 Merge pull request #4040 from alphataubio/cgdna
[CG-DNA examples/util] fixed indentations and ported python 2 code to python 3
2024-01-18 14:55:41 -05:00
bf9b8606ef Merge pull request #3905 from jrgissing/bond_react_fixes_aug23
Assorted bond/react fixes
2024-01-18 14:41:01 -05:00
3b3ab4207b Merge pull request #4042 from akohlmey/fmtlib-10.2.1
Update embedded fmtlib code to version 10.2.1
2024-01-18 14:33:28 -05:00
425421c1ca fix typo, cut-n-paste error, and add clarification 2024-01-18 14:32:40 -05:00
90a79d9a4b change unit test to include expressions with constant force or potential 2024-01-18 11:06:52 -05:00
73194764e9 add optional keywords "auto_offset" and "no_offset" to bond/angle style lepton 2024-01-18 11:05:52 -05:00
f3c5002634 Merge branch 'lammps:develop' into bond_react_fixes_aug23 2024-01-18 10:00:00 -05:00
57db9be64f add support for Lepton expressions with constant force or constant potential 2024-01-18 09:46:23 -05:00
5304c43fef add test for exceptions and evaluation of compiled expressions 2024-01-18 04:32:20 -05:00
2d8f622c6a Merge pull request #4039 from akohlmey/collected-small-changes
Collected small changes and fixes
2024-01-17 19:28:48 -05:00
189b08b4a5 Fix bug in some Kokkos fixes' unpack exchange on device 2024-01-17 14:47:59 -07:00
9c4597b5e9 more GPU package cleanup from Trung 2024-01-17 16:12:36 -05:00
6e2df52c8f remove dead code and align better with LAMMPS programming style 2024-01-17 16:09:16 -05:00
16d4811592 move fix bond/history back to src folder 2024-01-17 15:48:03 -05:00
d5da47cf33 Revert "adjust a few more fix styles for fix bond/history being optional"
This reverts commit 497c48bd80.
2024-01-17 15:47:11 -05:00
b47ad7acf4 Revert "make delete_bonds command code compatible with BPM package not being installed"
This reverts commit 715b030bd6.
2024-01-17 15:46:03 -05:00
f78f596d9d document using enumerator constants in Atom and AtomVec classes 2024-01-17 14:58:09 -05:00
ff0d18114e silence compiler warnings 2024-01-17 13:25:46 -05:00
f23ba8fbad make certain temporary test files are deleted 2024-01-16 17:54:08 -05:00
f5cbef8b12 fix typo 2024-01-16 15:57:42 -05:00
deb8416630 update tests for echoing the title line of molecule files 2024-01-16 13:53:07 -05:00
b6d27dfb96 add versionadded tag 2024-01-16 13:06:00 -05:00
103d8cadb9 add unit tests for dipoles in molecule files 2024-01-16 13:05:49 -05:00
9312ce0beb store and print title line of molecule 2024-01-16 12:20:02 -05:00
f6f7392595 make more user friendly 2024-01-16 12:04:13 -05:00
87297902a3 Add support for "Dipoles" section in molecule file 2024-01-16 12:04:00 -05:00
e3f81a2513 correct typo 2024-01-16 04:11:56 -05:00
e82ba61183 loop over all neighbor lists for created bonds same as for broken bonds 2024-01-16 04:02:38 -05:00
67f06097ee Updating utils functions for pair rheo/react 2024-01-15 22:04:26 -07:00
a34ddd7ccd Merge branch 'rheo' of github.com:jtclemm/lammps into rheo 2024-01-15 17:26:42 -07:00
56764f0244 Merge branch 'develop' into rheo 2024-01-15 17:26:23 -07:00
6f0fab8b08 bugfix for pair style coul/slater/long/gpu from Trung 2024-01-15 12:29:05 -05:00
74656f4e04 silence compiler warnings 2024-01-15 12:27:05 -05:00
4d830f1450 Merge branch 'develop' into collected-small-changes 2024-01-15 09:23:35 -05:00
8076d89422 Merge pull request #4037 from akohlmey/bigint_dof_computation
Make computation of PPPM grid counts and DOFs removed by fixes compatible with large systems
2024-01-15 09:22:43 -05:00